Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005981A_C01 KMC005981A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22351.1| hypothetical protein [Plasmodium yoelii yoelii] 32 7.4
gb|EAA43019.1| GLP_170_174550_178482 [Giardia lamblia ATCC 50803] 31 9.7
>gb|EAA22351.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 5229
Score = 31.6 bits (70), Expect = 7.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Frame = +3
Query: 3 SHENVRYMNIYKTY------YL---LTVQLFYNKNKIKLSKLNQEHRRNNMV 131
S +N+ +NI K Y Y+ + Q+FY K+KLSK N E+ N V
Sbjct: 1113 SEQNLNTLNIVKLYRNNFNTYMSKNINRQVFYMAKKVKLSKYNDENLNENSV 1164
>gb|EAA43019.1| GLP_170_174550_178482 [Giardia lamblia ATCC 50803]
Length = 1310
Score = 31.2 bits (69), Expect = 9.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 397 VLAIILLDKILYHQMVHYSRSQLNEIMSYQLSIKNY 290
V+AII+ D + + +YS Q+ ++ Y L++KNY
Sbjct: 1114 VIAIIVHDTGAFPKSPYYSEKQIGNLLHYALTLKNY 1149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,991,498
Number of Sequences: 1393205
Number of extensions: 9272001
Number of successful extensions: 21545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21543
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
