Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005960A_C01 KMC005960A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65569.1| mKIAA0458 protein [Mus musculus] 37 0.11
gb|EAA33893.1| hypothetical protein [Neurospora crassa] 37 0.19
ref|XP_208528.1| hypothetical protein XP_208528 [Homo sapiens] g... 37 0.19
ref|NP_446337.1| arginine-glutamic acid dipeptide (RE) repeats; ... 37 0.19
ref|NP_036234.2| arginine-glutamic acid dipeptide (RE) repeats; ... 36 0.32
>dbj|BAC65569.1| mKIAA0458 protein [Mus musculus]
Length = 882
Score = 37.4 bits (85), Expect = 0.11
Identities = 29/98 (29%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Frame = -3
Query: 515 HNAHASFPPSVSYQ---PPLPA--PRSNIEVHHGPGVVPSPFTLQPNASGGSFIPSVQSG 351
H H S P S PP PA P S++ HH P P P L P + P+ G
Sbjct: 267 HPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 326
Query: 350 IVSFQSFRGGVESLHQEALAPNPWGGSFPPSSLGPKSP 237
+ QS S L P FP P P
Sbjct: 327 LTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPFVPGGP 364
>gb|EAA33893.1| hypothetical protein [Neurospora crassa]
Length = 1551
Score = 36.6 bits (83), Expect = 0.19
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -3
Query: 491 PSVSYQPPLPAPRSNIEVHHGPGVVPSPFTLQPNASGGSFIPSVQSGIVSFQSFRG 324
P + P+P P SN V P PSP P SGG PS S ++F SF G
Sbjct: 132 PHAAGSVPIPIPGSNARVP-SPAASPSPIPQVPQQSGGQRAPSNISAPMTFGSFPG 186
>ref|XP_208528.1| hypothetical protein XP_208528 [Homo sapiens]
gi|27734821|ref|NP_775849.1| hypothetical protein
FLJ90834 [Homo sapiens] gi|22761324|dbj|BAC11541.1|
unnamed protein product [Homo sapiens]
Length = 251
Score = 36.6 bits (83), Expect = 0.19
Identities = 26/82 (31%), Positives = 37/82 (44%), Gaps = 1/82 (1%)
Frame = -3
Query: 479 YQPPLPAPRSNIEVHHGPGVVPSPFTLQPNA-SGGSFIPSVQSGIVSFQSFRGGVESLHQ 303
YQPP PA R + + G++P P P SG ++P++ ++ G +
Sbjct: 69 YQPPQPASRPQAKRYQ--GLLPVPLAPHPLCLSGQLYLPNIPCTVID-----GCGPVISH 121
Query: 302 EALAPNPWGGSFPPSSLGPKSP 237
L PWG PPS LG SP
Sbjct: 122 LKLTMYPWG--LPPSHLGSSSP 141
>ref|NP_446337.1| arginine-glutamic acid dipeptide (RE) repeats; atrophin-1 related
protein [Rattus norvegicus] gi|11360394|pir||T42731
atrophin-1 related protein - rat
gi|1209103|gb|AAA98970.1| atrophin-1 related protein
[Rattus norvegicus]
Length = 1006
Score = 36.6 bits (83), Expect = 0.19
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Frame = -3
Query: 515 HNAHASFPPSVSYQ---PPLPA--PRSNIEVHHGPGVVPSPFTLQPNASGGSFIPSVQSG 351
H H S P S PP PA P S++ HH P P P L P + P+ G
Sbjct: 385 HPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 444
Query: 350 IVSFQSF---------RGGVESLHQEALAP-NPWGGSFPPSSLGPKSP 237
+ QS GG+ + ++ P +P+ PP P P
Sbjct: 445 LTQSQSLPPPAASHPTTGGLHQVPSQSPFPQHPFVPGGPPPITPPSCP 492
>ref|NP_036234.2| arginine-glutamic acid dipeptide (RE) repeats; atrophin 1-like;
arginine glutamic acid dipeptide RE repeats [Homo
sapiens] gi|8096340|dbj|BAA95898.1| RERE [Homo sapiens]
Length = 1566
Score = 35.8 bits (81), Expect = 0.32
Identities = 32/107 (29%), Positives = 40/107 (36%), Gaps = 14/107 (13%)
Frame = -3
Query: 515 HNAHASFPPSVSYQ---PPLPA--PRSNIEVHHGPGVVPSPFTLQPNASGGSFIPSVQSG 351
H H S P S PP PA P S++ HH P P P L P + P+ G
Sbjct: 947 HPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006
Query: 350 IVSFQSFRGGVES-----LHQEA----LAPNPWGGSFPPSSLGPKSP 237
+ Q+ S LHQ A A +P+ PP P P
Sbjct: 1007 LTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPPTCP 1053
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,665,412
Number of Sequences: 1393205
Number of extensions: 12295614
Number of successful extensions: 35383
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 32022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35169
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
