Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005956A_C01 KMC005956A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182243.2| hypothetical protein; protein id: At2g47210.1, ... 57 1e-07
pir||D84912 hypothetical protein At2g47210 [imported] - Arabidop... 52 4e-06
ref|NP_635658.1| transcriptional regulator marR family [Xanthomo... 33 2.3
ref|NP_640637.1| transcriptional regulator marR family [Xanthomo... 33 2.3
gb|ZP_00020826.1| hypothetical protein [Chloroflexus aurantiacus] 33 3.0
>ref|NP_182243.2| hypothetical protein; protein id: At2g47210.1, supported by cDNA:
gi_17381135, supported by cDNA: gi_20465554 [Arabidopsis
thaliana] gi|17381136|gb|AAL36380.1| unknown protein
[Arabidopsis thaliana] gi|20465555|gb|AAM20260.1|
unknown protein [Arabidopsis thaliana]
Length = 441
Score = 57.4 bits (137), Expect = 1e-07
Identities = 30/56 (53%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = -3
Query: 548 YGESPATPXDRTFIPDFMNFGGERVGKKDHKRKG-------PSSGHKRPKKQKASD 402
Y P TP DR F PD +FG ER KK+ KRKG PS HKRP+K KASD
Sbjct: 385 YAAMPDTPKDRVFAPDPFSFGAERPIKKEQKRKGPGRQADTPSPAHKRPRKLKASD 440
>pir||D84912 hypothetical protein At2g47210 [imported] - Arabidopsis thaliana
gi|2275199|gb|AAB63821.1| hypothetical protein
[Arabidopsis thaliana]
Length = 486
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/61 (47%), Positives = 32/61 (51%), Gaps = 12/61 (19%)
Frame = -3
Query: 548 YGESPATPXDRTFIPDFMNFGGERVGKKDHKRK------------GPSSGHKRPKKQKAS 405
Y P TP DR F PD +FG ER KK+ KRK PS HKRP+K KAS
Sbjct: 425 YAAMPDTPKDRVFAPDPFSFGAERPIKKEQKRKVVHIRGPGRQADTPSPAHKRPRKLKAS 484
Query: 404 D 402
D
Sbjct: 485 D 485
>ref|NP_635658.1| transcriptional regulator marR family [Xanthomonas campestris pv.
campestris str. ATCC 33913] gi|21111230|gb|AAM39582.1|
transcriptional regulator marR family [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 153
Score = 33.1 bits (74), Expect = 2.3
Identities = 18/48 (37%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = -1
Query: 490 LEAKGLAKRTTSARDRHQVIKDLKNRRPQISSSSGGTPER--CLNLCN 353
LE+ GL RT +A D QVI L + + S +G PE+ C + C+
Sbjct: 85 LESAGLLTRTRAAHDERQVIIGLADAGRALRSKAGAVPEQVFCASACS 132
>ref|NP_640637.1| transcriptional regulator marR family [Xanthomonas axonopodis pv.
citri str. 306] gi|21106349|gb|AAM35173.1|
transcriptional regulator marR family [Xanthomonas
axonopodis pv. citri str. 306]
Length = 153
Score = 33.1 bits (74), Expect = 2.3
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = -1
Query: 490 LEAKGLAKRTTSARDRHQVIKDLKNRRPQISSSSGGTPER--CLNLCN 353
L+A GL RT +A D QVI L + S +G PE+ C + C+
Sbjct: 85 LQAAGLVSRTRAANDERQVIIALTETGRALRSKAGAVPEQVFCASACS 132
>gb|ZP_00020826.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 667
Score = 32.7 bits (73), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 155 YFLAGQASQFTGMPCILGWSW 93
Y AG+ + FTG+P ILGW W
Sbjct: 590 YQWAGRIATFTGLPTILGWEW 610
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,669,196
Number of Sequences: 1393205
Number of extensions: 10308121
Number of successful extensions: 23942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23931
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
