Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005952A_C01 KMC005952A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199129.1| unknown protein; protein id: At5g43150.1 [Arabi... 76 4e-13
gb|AAN77294.1| Unknown protein [Oryza sativa (japonica cultivar-... 75 6e-13
dbj|BAC16195.1| hypothetical protein~similar to Oryza sativa chr... 62 7e-09
gb|AAL34131.1|AC090713_18 unknown protein [Oryza sativa (japonic... 60 2e-08
gb|AAL87176.1|AF480497_4 hypothetical protein [Oryza sativa (jap... 58 1e-07
>ref|NP_199129.1| unknown protein; protein id: At5g43150.1 [Arabidopsis thaliana]
gi|9757842|dbj|BAB08279.1| gene_id:MMG4.18~unknown
protein [Arabidopsis thaliana]
gi|28466795|gb|AAO44006.1| At5g43150 [Arabidopsis
thaliana]
Length = 91
Score = 75.9 bits (185), Expect = 4e-13
Identities = 29/54 (53%), Positives = 38/54 (69%)
Frame = -2
Query: 549 EWWQNMMYPVRRVWFRLAHRFGIRKTGLLKLRHDVRACEYDDIRVMWEMLNGNE 388
EWW M +P RR+W R R G R +GLL+L HDV +CEY+DI +MW +L+ NE
Sbjct: 8 EWWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNE 61
>gb|AAN77294.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 91
Score = 75.1 bits (183), Expect = 6e-13
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = -2
Query: 546 WWQNMMYPVRRVWFRLAHRFGIRKTGLLKLRHDVRACEYDDIRVMWEMLN 397
WW ++ PVRR W +A RFG+R+TGL +LR +V CEY+D+RVMWEML+
Sbjct: 4 WWDRVVLPVRRAWLGVAARFGVRQTGLWRLRQEVSTCEYEDVRVMWEMLS 53
>dbj|BAC16195.1| hypothetical protein~similar to Oryza sativa chromosome
3,OSJNBa0002J24.5 [Oryza sativa (japonica
cultivar-group)]
Length = 94
Score = 61.6 bits (148), Expect = 7e-09
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Frame = -2
Query: 525 PVRRVWFRLAHRFGIRKT-GLLKLRHDVRACEYDDIRVMWEMLNGNESEFVP----SPSP 361
PV+RVW L+ R G+R+T GL KLR++VR CEY D+ VMWEML+ ++ P + +
Sbjct: 11 PVKRVWLGLSARLGLRRTTGLGKLRNEVRTCEYSDVHVMWEMLSSMDAAAPPRHAAAAAA 70
Query: 360 GKSQKYHWKLFRWAR 316
G+ ++ W+R
Sbjct: 71 GRKRRRPAATAAWSR 85
>gb|AAL34131.1|AC090713_18 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 94
Score = 60.5 bits (145), Expect = 2e-08
Identities = 32/85 (37%), Positives = 47/85 (54%), Gaps = 13/85 (15%)
Frame = -2
Query: 525 PVRRVWFRLAHRFGIRKT-GLLKLRHDVRACEYDDIRVMWEMLNGNESEF---------- 379
PV+RVW LA R G+R+T GL KL+ +VR CEY D+ +MWEML ++
Sbjct: 9 PVKRVWLGLAARLGLRRTSGLGKLKKEVRTCEYHDVHIMWEMLRKTDAPVPMAEKEAAAA 68
Query: 378 --VPSPSPGKSQKYHWKLFRWARCA 310
V + + + +K W+ F + CA
Sbjct: 69 AAVAAAAGARRRKAAWRRFLYYCCA 93
>gb|AAL87176.1|AF480497_4 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 92
Score = 57.8 bits (138), Expect = 1e-07
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Frame = -2
Query: 549 EWWQN-MMYPVRRVWFRLAHRFGIRKTG-----LLKLRHDVRACEYDDIRVMWEMLNGNE 388
EWWQ ++ PV+R W +A R +K L+KL D++ C Y+D++VMWE+L +E
Sbjct: 2 EWWQRAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQRSE 61
Query: 387 SEFVPS--PSPGKSQKYHWKLFRWARCAPYNPDH 292
+ + + PSPG ++ W R AP H
Sbjct: 62 TARLATAPPSPGSARALIWP----GRAAPPRRRH 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,489,220
Number of Sequences: 1393205
Number of extensions: 14533469
Number of successful extensions: 45782
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 41656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45074
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
