Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005921A_C01 KMC005921A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181609.1| putative SNF2/SWI2 family transcription factor;... 71 7e-12
ref|NP_702022.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.2
gb|AAM61550.1| unknown [Arabidopsis thaliana] 32 3.6
ref|NP_671925.1| auxin-regulated protein; protein id: At2g36000.... 32 3.6
ref|NP_565830.2| auxin-regulated protein; protein id: At2g36000.... 32 3.6
>ref|NP_181609.1| putative SNF2/SWI2 family transcription factor; protein id:
At2g40770.1 [Arabidopsis thaliana]
gi|25408730|pir||F84833 probable SNF2/SWI2 family
transcription factor [imported] - Arabidopsis thaliana
Length = 1648
Score = 71.2 bits (173), Expect = 7e-12
Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Frame = -3
Query: 530 DSIYKLNRSRSNH--SFISGNTKNRDPPVLTLKDVESLLSRTPVTMPESDENP-IANADL 360
+SIYKLNR+++ + SF S NTKN+D LTLKD+ESL + E ++NP +L
Sbjct: 1559 ESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLESLFASPTAETAEMEQNPGERQENL 1618
Query: 359 RNFPPSMAAAIAAERRLND 303
R+ PPS+AAA+AAERR+ +
Sbjct: 1619 RDLPPSVAAALAAERRMKE 1637
>ref|NP_702022.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497199|gb|AAN36746.1|AE014818_11 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 304
Score = 33.9 bits (76), Expect = 1.2
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +1
Query: 55 CKGKKYNDYNNYANKSHIILSSKRKSKYNEQSYE*K 162
C GKK N Y + NK H + K K+K N Q+Y+ K
Sbjct: 149 CNGKKKNHYKDNLNKIHSHNNKKVKNKLNNQTYKCK 184
>gb|AAM61550.1| unknown [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 171 PLMDGILSTATTSPTDYCTVAHVPTLPASFEPSEMRRKTKSCPMIIKSPLSSYS 332
PL+ LS A S DY T T P +F + RR CP ++ SPL+S++
Sbjct: 98 PLLSTALS-AVESVVDYMT-----TPPINFTLEDFRRLVSMCPELLTSPLTSHT 145
>ref|NP_671925.1| auxin-regulated protein; protein id: At2g36000.2, supported by
cDNA: 123727. [Arabidopsis thaliana]
gi|20197994|gb|AAD21457.2| expressed protein
[Arabidopsis thaliana]
Length = 318
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 171 PLMDGILSTATTSPTDYCTVAHVPTLPASFEPSEMRRKTKSCPMIIKSPLSSYS 332
PL+ LS A S DY T T P +F + RR CP ++ SPL+S++
Sbjct: 96 PLLSTALS-AVESVVDYMT-----TPPINFTLQDFRRLVSMCPELLTSPLTSHT 143
>ref|NP_565830.2| auxin-regulated protein; protein id: At2g36000.1, supported by
cDNA: gi_14532493, supported by cDNA: gi_14532527,
supported by cDNA: gi_18655376 [Arabidopsis thaliana]
gi|25408435|pir||F84775 hypothetical protein At2g36000
[imported] - Arabidopsis thaliana
gi|14532494|gb|AAK63975.1| At2g36000/F11F19.9
[Arabidopsis thaliana] gi|14532528|gb|AAK63992.1|
At2g36000/F11F19.9 [Arabidopsis thaliana]
gi|18655377|gb|AAL76144.1| At2g36000/F11F19.9
[Arabidopsis thaliana]
Length = 333
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 171 PLMDGILSTATTSPTDYCTVAHVPTLPASFEPSEMRRKTKSCPMIIKSPLSSYS 332
PL+ LS A S DY T T P +F + RR CP ++ SPL+S++
Sbjct: 96 PLLSTALS-AVESVVDYMT-----TPPINFTLQDFRRLVSMCPELLTSPLTSHT 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,072,359
Number of Sequences: 1393205
Number of extensions: 8938585
Number of successful extensions: 23285
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23216
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
