Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005906A_C02 KMC005906A_c02
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_128095.3| expressed sequence AA407480 [Mus musculus] gi|2... 31 7.2
ref|XP_235640.1| similar to chromosome 11 open reading frame 25 ... 31 9.5
ref|XP_113743.3| similar to SI:PACKT90.1 (novel protein) [Danio ... 31 9.5
ref|NP_492726.1| Putative protein, with ER retention signal, nem... 31 9.5
>ref|XP_128095.3| expressed sequence AA407480 [Mus musculus]
gi|26354410|dbj|BAC40833.1| unnamed protein product [Mus
musculus]
Length = 484
Score = 31.2 bits (69), Expect = 7.2
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
Frame = -2
Query: 497 CIHVEFCASVILIWILLI--SLWTVCAYRLA 411
CI V CAS + WILLI S+ + YRL+
Sbjct: 23 CIRVTLCASAVFFWILLIIASVIGIIVYRLS 53
>ref|XP_235640.1| similar to chromosome 11 open reading frame 25 [Homo sapiens]
[Rattus norvegicus]
Length = 1057
Score = 30.8 bits (68), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 497 CIHVEFCASVILIWILLI--SLWTVCAYRLA 411
CI + CAS + WILLI S+ + YRL+
Sbjct: 321 CIRITLCASAVFFWILLIIASVIGIIVYRLS 351
>ref|XP_113743.3| similar to SI:PACKT90.1 (novel protein) [Danio rerio] [Homo
sapiens]
Length = 876
Score = 30.8 bits (68), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 497 CIHVEFCASVILIWILLI--SLWTVCAYRLA 411
CI + CAS + WILLI S+ + YRL+
Sbjct: 416 CIRITLCASAVFFWILLIIASVIGIIVYRLS 446
>ref|NP_492726.1| Putative protein, with ER retention signal, nematode specific (51.6
kD) [Caenorhabditis elegans] gi|6580267|emb|CAB63336.1|
Hypothetical protein Y106G6H.1 [Caenorhabditis elegans]
Length = 453
Score = 30.8 bits (68), Expect = 9.5
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 15 FSTHRTKAHPQ--MSICHKFDDSLKSKI-KKNTIAIQDVFRRISWGTSSNFPPFAHPEPR 185
FST T AHP S+CH+F + + SK+ K N++ I D IS ++F P+P+
Sbjct: 206 FSTLAT-AHPGPFCSLCHRFAEEIHSKVLKPNSLLITDDEYHISHLLYNHF-----PKPK 259
Query: 186 TIMT 197
I T
Sbjct: 260 AICT 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,491,376
Number of Sequences: 1393205
Number of extensions: 9199284
Number of successful extensions: 17968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17966
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
