Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005902A_C01 KMC005902A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_393948.1| conserved hypothetical membrane protein [Thermo... 35 0.67
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 34 1.5
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 34 1.5
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 34 1.5
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 34 1.5
>ref|NP_393948.1| conserved hypothetical membrane protein [Thermoplasma acidophilum]
gi|10639640|emb|CAC11612.1| conserved hypothetical
membrane protein [Thermoplasma acidophilum]
Length = 1018
Score = 35.0 bits (79), Expect = 0.67
Identities = 21/58 (36%), Positives = 32/58 (54%)
Frame = -3
Query: 286 LESSLKT*FPK*ASIGLVLSLFALGLYFRPI*KLGLYFVFSLGLYSGRIRFGVLDLYY 113
+E + T + IG+VLS+ +GL+FR + + FSL L S I FG+ D+ Y
Sbjct: 462 IEQEVMTGLVRALIIGIVLSILIVGLFFRS--PVAAFLPFSLFLMSSIISFGLNDILY 517
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 431 PQCNSSNKSPPYPIRTIFQSNSKKDPESSSPSEAEGEQHDLT 556
PQ +SS SPP P T ++ PES P+ A G +++
Sbjct: 413 PQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS 454
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 431 PQCNSSNKSPPYPIRTIFQSNSKKDPESSSPSEAEGEQHDLT 556
PQ +SS SPP P T ++ PES P+ A G +++
Sbjct: 378 PQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS 419
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 431 PQCNSSNKSPPYPIRTIFQSNSKKDPESSSPSEAEGEQHDLT 556
PQ +SS SPP P T ++ PES P+ A G +++
Sbjct: 413 PQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS 454
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 431 PQCNSSNKSPPYPIRTIFQSNSKKDPESSSPSEAEGEQHDLT 556
PQ +SS SPP P T ++ PES P+ A G +++
Sbjct: 203 PQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREIS 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,407,537
Number of Sequences: 1393205
Number of extensions: 11087929
Number of successful extensions: 26208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26187
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
