Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005896A_C01 KMC005896A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174686.1| hypothetical protein; protein id: At1g34260.1 [... 112 2e-24
gb|AAK55470.1|AC084295_3 putative phosphoinositide kinase [Oryza... 103 1e-21
gb|AAD55502.1|AC008148_12 Unknown protein [Arabidopsis thaliana] 96 3e-19
ref|NP_177257.2| unknown protein; protein id: At1g71010.1, suppo... 96 3e-19
ref|NP_195050.1| putative protein; protein id: At4g33240.1 [Arab... 95 6e-19
>ref|NP_174686.1| hypothetical protein; protein id: At1g34260.1 [Arabidopsis thaliana]
gi|25518731|pir||G86466 hypothetical protein F23M19.8
[imported] - Arabidopsis thaliana
gi|5091620|gb|AAD39608.1|AC007454_7 Contains similarity
to gi|836774 FAB1 protein from Saccharomyces cerevisiae
genome gb|D50617. [Arabidopsis thaliana]
Length = 1456
Score = 112 bits (281), Expect = 2e-24
Identities = 49/65 (75%), Positives = 56/65 (85%)
Frame = -1
Query: 532 ELVCGIIDYLXQYTWDQHLETWMKTSLVVPKNVLPTIISPKEYQKRFRKFMSTYFLSVPD 353
ELVCGIIDYL QYTWD+ LETW+K+SLVVPKNV PT+ISP +Y+ RFRKFM T+FL VPD
Sbjct: 1389 ELVCGIIDYLRQYTWDKQLETWVKSSLVVPKNVQPTVISPIDYKTRFRKFMKTHFLCVPD 1448
Query: 352 HWCSQ 338
WC Q
Sbjct: 1449 QWCDQ 1453
>gb|AAK55470.1|AC084295_3 putative phosphoinositide kinase [Oryza sativa]
Length = 1702
Score = 103 bits (257), Expect = 1e-21
Identities = 50/83 (60%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Frame = -1
Query: 532 ELVCGIIDYLXQYTWDQHLETWMKTSLVV--PKNVLPTIISPKEYQKRFRKFMSTYFLSV 359
ELV GIID++ QYTWD+HLETW+KTS ++ PKNV PT+ISPK+Y+ RFRK MSTYFL V
Sbjct: 1620 ELVMGIIDFMRQYTWDKHLETWVKTSGILGGPKNVAPTVISPKQYKMRFRKAMSTYFLVV 1679
Query: 358 PDHWCSQKSPVPCKHCCSGEEDD 290
PD W S + VP K +D+
Sbjct: 1680 PDQW-SPPAVVPSKQGAENNQDN 1701
>gb|AAD55502.1|AC008148_12 Unknown protein [Arabidopsis thaliana]
Length = 1648
Score = 95.9 bits (237), Expect = 3e-19
Identities = 42/66 (63%), Positives = 55/66 (82%), Gaps = 2/66 (3%)
Frame = -1
Query: 532 ELVCGIIDYLXQYTWDQHLETWMKTSLVV--PKNVLPTIISPKEYQKRFRKFMSTYFLSV 359
ELV GIID++ QYTWD+HLETW+K S ++ PKN PTI+SPK+Y++RFRK M+TYFL+V
Sbjct: 1583 ELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIVSPKQYKRRFRKAMTTYFLTV 1642
Query: 358 PDHWCS 341
P+ W S
Sbjct: 1643 PEPWTS 1648
>ref|NP_177257.2| unknown protein; protein id: At1g71010.1, supported by cDNA:
gi_17473835 [Arabidopsis thaliana]
gi|17473836|gb|AAL38344.1| unknown protein [Arabidopsis
thaliana]
Length = 793
Score = 95.9 bits (237), Expect = 3e-19
Identities = 42/66 (63%), Positives = 55/66 (82%), Gaps = 2/66 (3%)
Frame = -1
Query: 532 ELVCGIIDYLXQYTWDQHLETWMKTSLVV--PKNVLPTIISPKEYQKRFRKFMSTYFLSV 359
ELV GIID++ QYTWD+HLETW+K S ++ PKN PTI+SPK+Y++RFRK M+TYFL+V
Sbjct: 728 ELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIVSPKQYKRRFRKAMTTYFLTV 787
Query: 358 PDHWCS 341
P+ W S
Sbjct: 788 PEPWTS 793
>ref|NP_195050.1| putative protein; protein id: At4g33240.1 [Arabidopsis thaliana]
gi|7486447|pir||T05204 hypothetical protein F4I10.170 -
Arabidopsis thaliana gi|4455338|emb|CAB36798.1| putative
protein [Arabidopsis thaliana] gi|7270272|emb|CAB80041.1|
putative protein [Arabidopsis thaliana]
Length = 1757
Score = 94.7 bits (234), Expect = 6e-19
Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 2/64 (3%)
Frame = -1
Query: 532 ELVCGIIDYLXQYTWDQHLETWMKTSLVV--PKNVLPTIISPKEYQKRFRKFMSTYFLSV 359
ELV GIID++ QYTWD+HLETW+KTS ++ PKN PT+ISP++Y+KRFRK M+ YFL V
Sbjct: 1663 ELVLGIIDFMRQYTWDKHLETWVKTSGLLGGPKNSTPTVISPQQYKKRFRKAMTAYFLMV 1722
Query: 358 PDHW 347
PD W
Sbjct: 1723 PDQW 1726
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,717,136
Number of Sequences: 1393205
Number of extensions: 9093881
Number of successful extensions: 19461
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 18944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19434
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
