Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005895A_C01 KMC005895A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA66200.1| signal recognition particle 54 kDa subunit 37 0.11
ref|NP_564535.1| signal recognition particle 54 kDa protein 2 (S... 37 0.11
dbj|BAB89854.1| putative signal recognition particle 54K protein... 37 0.11
pir||G96526 hypothetical protein F27K7.8 [imported] - Arabidopsi... 37 0.11
sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2... 36 0.24
>gb|AAA66200.1| signal recognition particle 54 kDa subunit
Length = 495
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/28 (71%), Positives = 21/28 (74%)
Frame = -2
Query: 295 HMSTVLPPHMLKHIGGWED*LKSLMKQM 212
HMS VLPP MLK IGG L+SLMKQM
Sbjct: 454 HMSKVLPPQMLKQIGGMGG-LQSLMKQM 480
>ref|NP_564535.1| signal recognition particle 54 kDa protein 2 (SRP54), putative;
protein id: At1g48900.1, supported by cDNA: gi_15450460,
supported by cDNA: gi_15810009, supported by cDNA:
gi_17386101 [Arabidopsis thaliana]
gi|21542461|sp|P49967|SR53_ARATH Signal recognition
particle 54 kDa protein 3 (SRP54)
gi|15450461|gb|AAK96524.1| At1g48900/F27K7_8
[Arabidopsis thaliana] gi|15810010|gb|AAL06932.1|
At1g48900/F27K7_8 [Arabidopsis thaliana]
gi|17386102|gb|AAL38597.1|AF446864_1 At1g48900/F27K7_8
[Arabidopsis thaliana]
Length = 495
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/28 (71%), Positives = 21/28 (74%)
Frame = -2
Query: 295 HMSTVLPPHMLKHIGGWED*LKSLMKQM 212
HMS VLPP MLK IGG L+SLMKQM
Sbjct: 454 HMSKVLPPQMLKQIGGMGG-LQSLMKQM 480
>dbj|BAB89854.1| putative signal recognition particle 54K protein [Oryza sativa
(japonica cultivar-group)] gi|21743252|dbj|BAC03250.1|
putative signal recognition particle 54K protein [Oryza
sativa (japonica cultivar-group)]
Length = 496
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/28 (71%), Positives = 21/28 (74%)
Frame = -2
Query: 295 HMSTVLPPHMLKHIGGWED*LKSLMKQM 212
HMS VLPP MLK IGG L+SLMKQM
Sbjct: 454 HMSKVLPPQMLKQIGGMGG-LQSLMKQM 480
>pir||G96526 hypothetical protein F27K7.8 [imported] - Arabidopsis thaliana
gi|11094805|gb|AAG29734.1|AC084414_2 signal recognition
particle 54 kDa protein 2 (SRP54), putative [Arabidopsis
thaliana]
Length = 522
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/28 (71%), Positives = 21/28 (74%)
Frame = -2
Query: 295 HMSTVLPPHMLKHIGGWED*LKSLMKQM 212
HMS VLPP MLK IGG L+SLMKQM
Sbjct: 481 HMSKVLPPQMLKQIGGMGG-LQSLMKQM 507
>sp|P49972|SR52_LYCES SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN 2 (SRP54)
gi|1076577|pir||S51598 signal recognition particle 54K
protein - tomato (cv. UC82-B) gi|556902|emb|CAA84288.1|
54-kD signal recognition particle (SRP) specific protein
[Lycopersicon esculentum]
Length = 499
Score = 36.2 bits (82), Expect = 0.24
Identities = 19/28 (67%), Positives = 21/28 (74%)
Frame = -2
Query: 295 HMSTVLPPHMLKHIGGWED*LKSLMKQM 212
HMS VLPP MLK IGG L++LMKQM
Sbjct: 454 HMSKVLPPQMLKQIGGMGG-LQNLMKQM 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,088,863
Number of Sequences: 1393205
Number of extensions: 8271888
Number of successful extensions: 18852
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18850
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
