Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005890A_C01 KMC005890A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196710.1| beta-adaptin-like protein A; protein id: At5g11... 67 2e-10
dbj|BAB19072.1| beta-adaptin-like protein A [Oryza sativa (japon... 63 2e-09
dbj|BAA22826.1| ORF253 [Cyanidium caldarium] 33 1.5
ref|NP_642749.1| conserved hypothetical protein [Xanthomonas axo... 32 5.8
ref|NP_230120.1| conserved hypothetical protein [Vibrio cholerae... 31 7.6
>ref|NP_196710.1| beta-adaptin-like protein A; protein id: At5g11490.1, supported by
cDNA: gi_7385050 [Arabidopsis thaliana]
gi|11276930|pir||T48508 beta-adaptin-like protein A -
Arabidopsis thaliana gi|7385051|gb|AAF61671.1|
beta-adaptin-like protein A [Arabidopsis thaliana]
gi|7573406|emb|CAB87709.1| beta-adaptin-like protein A
[Arabidopsis thaliana]
Length = 841
Score = 66.6 bits (161), Expect = 2e-10
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = -1
Query: 522 FFFAPKADEASVYLVECIIHTSSGQSPINIKADDPSSSPAFSTLFPSALSQFGLP 358
FFFA K E S YL ECII+TSS ++ I +KAD+ S+ AF+T+F +ALS+FG+P
Sbjct: 787 FFFAQKESEPSNYLTECIINTSSAKAQIKVKADEQSTCQAFTTVFETALSKFGMP 841
>dbj|BAB19072.1| beta-adaptin-like protein A [Oryza sativa (japonica
cultivar-group)]
Length = 846
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = -1
Query: 522 FFFAPKADEASVYLVECIIHTSSGQSPINIKADDPSSSPAFSTLFPSALSQFGL 361
FF+A K + +LVECI++T+S ++ I +KADD +++ AFSTLF SALS+FGL
Sbjct: 792 FFYAQKDGATAFFLVECIVNTASAKAQIKVKADDGTAAEAFSTLFQSALSKFGL 845
>dbj|BAA22826.1| ORF253 [Cyanidium caldarium]
Length = 253
Score = 33.5 bits (75), Expect = 1.5
Identities = 21/65 (32%), Positives = 28/65 (42%)
Frame = +2
Query: 173 QLQNLLAKGIPRLIHGPDFPLFWKGKGCGPNIYHRFLYIQAGIPKFHDGLLHSTKGCSIK 352
Q+Q+LL + IH P F K K CG Y ++ PK HD S + C I
Sbjct: 31 QIQHLLLSRQVQSIHLP----FIKSKSCGVIDYQFHYQFKSNHPKIHDAFRQSLEACPIY 86
Query: 353 FQGKP 367
+ P
Sbjct: 87 YVVNP 91
>ref|NP_642749.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306] gi|21108690|gb|AAM37285.1| conserved
hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 702
Score = 31.6 bits (70), Expect = 5.8
Identities = 24/83 (28%), Positives = 33/83 (38%)
Frame = +2
Query: 104 GKPDSVFQTEYLPRNHHVGSDIKQLQNLLAKGIPRLIHGPDFPLFWKGKGCGPNIYHRFL 283
G D V + YL R+ + +D+ N LA L+H D P+ G P
Sbjct: 543 GLADEVIKCIYLRRHFEIINDLGMEYNYLAN----LLHARDVPILKSTSGEAPMSAQEIA 598
Query: 284 YIQAGIPKFHDGLLHSTKGCSIK 352
+AGI K G +S IK
Sbjct: 599 QAEAGIKKLIPGFDYSAVLAVIK 621
>ref|NP_230120.1| conserved hypothetical protein [Vibrio cholerae]
gi|11278847|pir||G82318 conserved hypothetical protein
VC0466 [imported] - Vibrio cholerae (strain N16961
serogroup O1) gi|9654892|gb|AAF93639.1| conserved
hypothetical protein [Vibrio cholerae]
Length = 140
Score = 31.2 bits (69), Expect = 7.6
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Frame = +2
Query: 101 TGKPDSVFQT-EYLPRNHHVGSDIKQLQ-NLLAKGIPRLIHGPDFPLFW-KGKGCGPNIY 271
T P F+ + +P + IK+ Q NLL G+P +HG D + K ++
Sbjct: 26 TASPLKAFKANDGIPNWDEIEKQIKEWQPNLLIVGLPTDLHGKDLDTITPRAKKFAQRLH 85
Query: 272 HRFLYIQAGIP-KFHDGLLHSTKGCSIKFQGKPNWDKADGNKVEKAGEELGSSAFILIGD 448
RF G+P + HD L +T+ + F G K G SA I++
Sbjct: 86 GRF-----GLPVELHDERLSTTEARAELF-------AMGGYKALSKGNVDCQSAVIILES 133
Query: 449 WPDDVW 466
W + W
Sbjct: 134 WFESQW 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,692,495
Number of Sequences: 1393205
Number of extensions: 12207113
Number of successful extensions: 28449
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28443
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
