Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005887A_C01 KMC005887A_c01
(950 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187930.1| hypothetical protein; protein id: At3g13225.1 [... 213 5e-54
ref|NP_056123.1| KIAA1014 protein [Homo sapiens] gi|22726243|gb|... 70 5e-11
dbj|BAA76858.2| KIAA1014 protein [Homo sapiens] 70 5e-11
pir||T46422 hypothetical protein DKFZp434M2023.1 - human (fragme... 70 5e-11
dbj|BAB14348.1| unnamed protein product [Homo sapiens] 70 5e-11
>ref|NP_187930.1| hypothetical protein; protein id: At3g13225.1 [Arabidopsis thaliana]
Length = 863
Score = 213 bits (541), Expect = 5e-54
Identities = 113/198 (57%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Frame = -3
Query: 888 PSTLSSIHAPGAVSVEDGVSLPPVTTETAADNTT-SSLVAKAQTKVVRSRKRSVAVGPSL 712
P+ S+ P + S + T + D T+ SSL+AK QTKV R++K++VA +L
Sbjct: 671 PNNSSTAAVPSSRSNDSTEVGSSATASKSTDVTSGSSLLAKGQTKVKRTKKKTVAATSTL 730
Query: 711 KSNKKVSSLVDKWKAAKEELLEEEEEPESVYEVLERKRQREIEEWRAKQIASGEAKDNAN 532
+SNKKVSSLVDKWKAAKEEL + EEE E E+L+RKR+REIEEW+++QIASGEAKDNAN
Sbjct: 731 RSNKKVSSLVDKWKAAKEELNDSEEE-EDDSEILDRKRKREIEEWKSRQIASGEAKDNAN 789
Query: 531 FQPLGGDWRERVKRKRQQAAKESVGKLQDAIGHSPDQPDLIELSKGLPSGXQVYWDETSK 352
FQPLGGDWRE+VKRKR++A K Q +PDL +LS LPS Q YWDE++K
Sbjct: 790 FQPLGGDWREKVKRKRERAEKS-----QKKDPEKQQKPDLTKLSANLPSEWQAYWDESTK 844
Query: 351 QVYYGNTTTSETTWTRPT 298
+VYYGNT+TS+T+WTRPT
Sbjct: 845 KVYYGNTSTSQTSWTRPT 862
>ref|NP_056123.1| KIAA1014 protein [Homo sapiens] gi|22726243|gb|AAH37404.1| Similar to
formin binding protein 4 [Homo sapiens]
Length = 1015
Score = 70.1 bits (170), Expect = 5e-11
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = -3
Query: 711 KSNKKVSSLVDKWKAAKEELLEEEEEPESVYEVLERKRQREIEEWRAKQIASGEAKDNAN 532
KS K+ SLV KW++ + EL +EE+ S E E Q+ IEEW+ +Q+ SG A+ NAN
Sbjct: 936 KSKTKMPSLVKKWQSIQREL-DEEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNAN 994
Query: 531 FQPLGGDWRERVKRKR 484
F+ L DWR R+KR++
Sbjct: 995 FEALPEDWRARLKRRK 1010
>dbj|BAA76858.2| KIAA1014 protein [Homo sapiens]
Length = 1050
Score = 70.1 bits (170), Expect = 5e-11
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = -3
Query: 711 KSNKKVSSLVDKWKAAKEELLEEEEEPESVYEVLERKRQREIEEWRAKQIASGEAKDNAN 532
KS K+ SLV KW++ + EL +EE+ S E E Q+ IEEW+ +Q+ SG A+ NAN
Sbjct: 971 KSKTKMPSLVKKWQSIQREL-DEEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNAN 1029
Query: 531 FQPLGGDWRERVKRKR 484
F+ L DWR R+KR++
Sbjct: 1030 FEALPEDWRARLKRRK 1045
>pir||T46422 hypothetical protein DKFZp434M2023.1 - human (fragment)
gi|6808095|emb|CAB70761.1| hypothetical protein [Homo
sapiens]
Length = 1013
Score = 70.1 bits (170), Expect = 5e-11
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = -3
Query: 711 KSNKKVSSLVDKWKAAKEELLEEEEEPESVYEVLERKRQREIEEWRAKQIASGEAKDNAN 532
KS K+ SLV KW++ + EL +EE+ S E E Q+ IEEW+ +Q+ SG A+ NAN
Sbjct: 934 KSKTKMPSLVKKWQSIQREL-DEEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNAN 992
Query: 531 FQPLGGDWRERVKRKR 484
F+ L DWR R+KR++
Sbjct: 993 FEALPEDWRARLKRRK 1008
>dbj|BAB14348.1| unnamed protein product [Homo sapiens]
Length = 560
Score = 70.1 bits (170), Expect = 5e-11
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = -3
Query: 711 KSNKKVSSLVDKWKAAKEELLEEEEEPESVYEVLERKRQREIEEWRAKQIASGEAKDNAN 532
KS K+ SLV KW++ + EL +EE+ S E E Q+ IEEW+ +Q+ SG A+ NAN
Sbjct: 481 KSKTKMPSLVKKWQSIQREL-DEEDNSSSSEEDRESTAQKRIEEWKQQQLVSGMAERNAN 539
Query: 531 FQPLGGDWRERVKRKR 484
F+ L DWR R+KR++
Sbjct: 540 FEALPEDWRARLKRRK 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 799,845,232
Number of Sequences: 1393205
Number of extensions: 17171941
Number of successful extensions: 69339
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 57802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65761
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53523731176
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
