Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005881A_C01 KMC005881A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174230.2| unknown protein; protein id: At1g29370.1, suppo... 167 2e-40
gb|AAL58943.1|AF462857_1 At1g29350/F15D2_27 [Arabidopsis thaliana] 166 2e-40
ref|NP_174229.2| unknown protein; protein id: At1g29350.1, suppo... 166 2e-40
pir||C86416 unknown protein, 25451-20507 [imported] - Arabidopsi... 152 5e-36
ref|NP_193549.1| hypothetical protein; protein id: At4g18150.1 [... 117 2e-25
>ref|NP_174230.2| unknown protein; protein id: At1g29370.1, supported by cDNA:
gi_17380759, supported by cDNA: gi_20465690 [Arabidopsis
thaliana] gi|17380760|gb|AAL36210.1| unknown protein
[Arabidopsis thaliana] gi|20465691|gb|AAM20314.1|
unknown protein [Arabidopsis thaliana]
Length = 831
Score = 167 bits (422), Expect = 2e-40
Identities = 93/181 (51%), Positives = 118/181 (64%), Gaps = 8/181 (4%)
Frame = +3
Query: 159 SGKVGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLL 338
S KVGG A + + IP SRK+VQSL EIV N P+ EIYA LK+CNMDPNE VSRLL
Sbjct: 3 SSKVGGGA---RKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLL 58
Query: 339 SQDPFHEVKSKREKKKESKDTTDSRPRGANNNSSSRGGGGGVRGGADRYAGRGGAAQFNS 518
SQDPFHEVKSK+EKKKE++D +DSRPRGANN + G RGG+ RYAGR G+ F+S
Sbjct: 59 SQDPFHEVKSKKEKKKETRDISDSRPRGANNTYNR-----GARGGSARYAGRSGSTHFSS 113
Query: 519 SDSGLLQGKPASRKENGTPAY--------GGGSTFFAPNAWDNSASRQVPSYSHSDSAGV 674
+DSG QGK ++KE+GT Y G +T+ P++ + ++P + D
Sbjct: 114 TDSGNFQGKSTNKKESGTQGYTSSWSSASGVANTYQTPHSEPVATENKLPPVTLGDGISS 173
Query: 675 S 677
S
Sbjct: 174 S 174
>gb|AAL58943.1|AF462857_1 At1g29350/F15D2_27 [Arabidopsis thaliana]
Length = 832
Score = 166 bits (421), Expect = 2e-40
Identities = 93/181 (51%), Positives = 118/181 (64%), Gaps = 8/181 (4%)
Frame = +3
Query: 159 SGKVGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLL 338
S KVGG A + + IP SRK+VQSL EIV N P+ EIYA LK+CNMDPNE VSRLL
Sbjct: 3 SSKVGGGA---RKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLL 58
Query: 339 SQDPFHEVKSKREKKKESKDTTDSRPRGANNNSSSRGGGGGVRGGADRYAGRGGAAQFNS 518
SQDPFHEVKSK+EKKKE++D +DSRPRGANN + G RGG+ RYAGR G+ F+S
Sbjct: 59 SQDPFHEVKSKKEKKKETRDISDSRPRGANNTYNR-----GARGGSARYAGRSGSTHFSS 113
Query: 519 SDSGLLQGKPASRKENGTPAY--------GGGSTFFAPNAWDNSASRQVPSYSHSDSAGV 674
+DSG QGK ++KE+GT Y G +T+ P++ + ++P + D
Sbjct: 114 TDSGNFQGKSTNKKESGTQGYTSSWSSASGVANTYQTPHSEPIAMENKLPPVTLGDGISS 173
Query: 675 S 677
S
Sbjct: 174 S 174
>ref|NP_174229.2| unknown protein; protein id: At1g29350.1, supported by cDNA:
gi_18087626 [Arabidopsis thaliana]
Length = 831
Score = 166 bits (421), Expect = 2e-40
Identities = 93/181 (51%), Positives = 118/181 (64%), Gaps = 8/181 (4%)
Frame = +3
Query: 159 SGKVGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLL 338
S KVGG A + + IP SRK+VQSL EIV N P+ EIYA LK+CNMDPNE VSRLL
Sbjct: 3 SSKVGGGA---RKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLL 58
Query: 339 SQDPFHEVKSKREKKKESKDTTDSRPRGANNNSSSRGGGGGVRGGADRYAGRGGAAQFNS 518
SQDPFHEVKSK+EKKKE++D +DSRPRGANN + G RGG+ RYAGR G+ F+S
Sbjct: 59 SQDPFHEVKSKKEKKKETRDISDSRPRGANNTYNR-----GARGGSARYAGRSGSTHFSS 113
Query: 519 SDSGLLQGKPASRKENGTPAY--------GGGSTFFAPNAWDNSASRQVPSYSHSDSAGV 674
+DSG QGK ++KE+GT Y G +T+ P++ + ++P + D
Sbjct: 114 TDSGNFQGKSTNKKESGTQGYTSSWSSASGVANTYQTPHSEPIAMENKLPPVTLGDGISS 173
Query: 675 S 677
S
Sbjct: 174 S 174
>pir||C86416 unknown protein, 25451-20507 [imported] - Arabidopsis thaliana
gi|12323523|gb|AAG51735.1|AC068667_14 unknown protein;
25451-20507 [Arabidopsis thaliana]
Length = 858
Score = 152 bits (383), Expect = 5e-36
Identities = 93/209 (44%), Positives = 118/209 (55%), Gaps = 36/209 (17%)
Frame = +3
Query: 159 SGKVGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLL 338
S KVGG A + + IP SRK+VQSL EIV N P+ EIYA LK+CNMDPNE VSRLL
Sbjct: 3 SSKVGGGA---RKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLL 58
Query: 339 SQ----------------------------DPFHEVKSKREKKKESKDTTDSRPRGANNN 434
SQ DPFHEVKSK+EKKKE++D +DSRPRGANN
Sbjct: 59 SQAVAFNMVPLVIVQLSSWFGFIEKKDVVNDPFHEVKSKKEKKKETRDISDSRPRGANNT 118
Query: 435 SSSRGGGGGVRGGADRYAGRGGAAQFNSSDSGLLQGKPASRKENGTPAY--------GGG 590
+ G RGG+ RYAGR G+ F+S+DSG QGK ++KE+GT Y G
Sbjct: 119 YNR-----GARGGSARYAGRSGSTHFSSTDSGNFQGKSTNKKESGTQGYTSSWSSASGVA 173
Query: 591 STFFAPNAWDNSASRQVPSYSHSDSAGVS 677
+T+ P++ + ++P + D S
Sbjct: 174 NTYQTPHSEPVATENKLPPVTLGDGISSS 202
>ref|NP_193549.1| hypothetical protein; protein id: At4g18150.1 [Arabidopsis
thaliana] gi|7485519|pir||T14815 hypothetical protein
F15J5.120 - Arabidopsis thaliana
gi|5817001|emb|CAB53656.1| hypothetical protein
[Arabidopsis thaliana] gi|7268608|emb|CAB78817.1|
hypothetical protein [Arabidopsis thaliana]
Length = 762
Score = 117 bits (292), Expect = 2e-25
Identities = 68/145 (46%), Positives = 90/145 (61%), Gaps = 2/145 (1%)
Frame = +3
Query: 168 VGGAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLLSQD 347
+GG G + G+P +SRK++Q LKEIV + EIYA L +C+M+P+EAV+RLLSQD
Sbjct: 1 MGGGGGSVSNANGGVPASSRKVIQDLKEIVE-CSELEIYAMLVECDMNPDEAVNRLLSQD 59
Query: 348 PFHEVKSKREKKKESKDTTDSRPRGANNNSSSRGGGGGVRGGADRY-AGRGGAAQFNSS- 521
FHE KSKREKKKE+KD DS R N G R G D Y RGG ++ S+
Sbjct: 60 TFHEAKSKREKKKETKDHADSWTRNVPNR--------GARSGNDSYNTSRGGRNKYKSNG 111
Query: 522 DSGLLQGKPASRKENGTPAYGGGST 596
+G +QG P +R+ENG + GS+
Sbjct: 112 KTGKIQGVPVNRRENGARNHLAGSS 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,198,455
Number of Sequences: 1393205
Number of extensions: 15802900
Number of successful extensions: 146912
Number of sequences better than 10.0: 995
Number of HSP's better than 10.0 without gapping: 77525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124191
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
