Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005880A_C01 KMC005880A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011673.1| First step in the methylation pathway for phosp... 33 2.8
ref|NP_071556.1| L-gulono-gamma-lactone oxidase [Rattus norvegic... 32 3.7
pir||OXRTGU L-gulonolactone oxidase (EC 1.1.3.8) - rat gi|286224... 32 3.7
ref|NP_298399.1| hypothetical protein [Xylella fastidiosa 9a5c] ... 32 3.7
ref|NP_778632.1| regulatory protein [Xylella fastidiosa Temecula... 32 6.3
>ref|NP_011673.1| First step in the methylation pathway for phosphatidylcholine
biosynthesis; Cho2p [Saccharomyces cerevisiae]
gi|129765|sp|P05374|PEM1_YEAST Phosphatidylethanolamine
N-methyltransferase (PEAMT) gi|83372|pir||A28443
phosphatidylethanolamine N-methyltransferase (EC
2.1.1.17) - yeast (Saccharomyces cerevisiae)
gi|172114|gb|AAA34850.1| phospholipid
N-methyltransferase gi|1045262|emb|CAA59814.1| ORF G6673
[Saccharomyces cerevisiae] gi|1323267|emb|CAA97171.1|
ORF YGR157w [Saccharomyces cerevisiae]
Length = 869
Score = 32.7 bits (73), Expect = 2.8
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 5/59 (8%)
Frame = -2
Query: 303 LAQVM*TYFLSLYL-----WLSLYCWRKLYANLLLLRGTGVWKKYTH*KKIRNRWWVWG 142
L Q TY + +YL W+ ++ WR L +L+L +W K + +++ W WG
Sbjct: 193 LMQDFVTYIIYVYLSIPYSWVQIFNWRSLLGVILIL--FNIWVKLDAHRVVKDYAWYWG 249
>ref|NP_071556.1| L-gulono-gamma-lactone oxidase [Rattus norvegicus]
gi|121141|sp|P10867|GGLO_RAT L-gulonolactone oxidase
(LGO) (L-gulono-gamma-lactone oxidase) (GLO)
gi|204150|gb|AAA41164.1| L-gulono-gamma-lactone oxidase
precursor
Length = 440
Score = 32.3 bits (72), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 504 DYGVRFFLITFPLWMGDFLKCFCFW--RFIQLLYLHSLHFSFFMSEKIHT 361
DY + F+L+ F LW +L C W RF + + S +S KI T
Sbjct: 248 DYAIGFYLLEFLLWTSTYLPCLVGWINRFFFWMLFNCKKESSNLSHKIFT 297
>pir||OXRTGU L-gulonolactone oxidase (EC 1.1.3.8) - rat
gi|286224|dbj|BAA02232.1| L-gulono-gamma-lactone oxidase
[Rattus norvegicus]
Length = 440
Score = 32.3 bits (72), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 504 DYGVRFFLITFPLWMGDFLKCFCFW--RFIQLLYLHSLHFSFFMSEKIHT 361
DY + F+L+ F LW +L C W RF + + S +S KI T
Sbjct: 248 DYAIGFYLLEFLLWTSTYLPCLVGWINRFFFWMLFNCKKESSNLSHKIFT 297
>ref|NP_298399.1| hypothetical protein [Xylella fastidiosa 9a5c]
gi|11361663|pir||E82723 hypothetical protein XF1109
[imported] - Xylella fastidiosa (strain 9a5c)
gi|9106064|gb|AAF83919.1|AE003946_10 hypothetical
protein [Xylella fastidiosa 9a5c]
Length = 293
Score = 32.3 bits (72), Expect = 3.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 246 CWRKLYANLLLLRGTGVW--KKYTH*KKIRNRWWVWGRGIL*HMET 115
CWR L + +L W ++ K++ N W WG G+L H T
Sbjct: 153 CWRALLTEVQVLLHQHAWNVERVARGKQMINSLWFWGAGVLPHTVT 198
>ref|NP_778632.1| regulatory protein [Xylella fastidiosa Temecula1]
gi|28056388|gb|AAO28281.1| regulatory protein [Xylella
fastidiosa Temecula1]
Length = 293
Score = 31.6 bits (70), Expect = 6.3
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 246 CWRKLYANLLLLRGTGVW--KKYTH*KKIRNRWWVWGRGIL*H 124
CWR L + +L W ++ K++ N W WG G+L H
Sbjct: 153 CWRALLTEVQVLLHQHAWNVERVARGKQMINSLWFWGAGVLPH 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,019,244
Number of Sequences: 1393205
Number of extensions: 9968348
Number of successful extensions: 31599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31404
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
