KMC005874A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005874A_C01 KMC005874A_c01
aaAACATTAACTTTCCTTACATGATTTACATAGAATTTAAACCAAATAACCTTATCAATG
TAAAAAAATATTCCACCAAATCCGCTAAATGGGTTTGAAGCATTAATTCAATGTATTGGC
TTTTTCAAATACAAACAAATAGATAATCAGTACATACTCATAAAACCTTTATCTAAATAG
CCTCTTAAGCATCGAGCCAAACTTCCACTTTCCCATCTGAATTTGCTCATTCTTCATGCC
TCGACAACAATGGAACTTATGCTGAAGCAAATGAACTTCAGTTCAGATAATCGGCAAAAG
GAAGCACAGGTGAATGATGTCTAACACAGTTTTCCCACAGATCAAGGATGAAGAAGCAAA
AGCACTTGAACGGACTGTGGTCAAAGGTTGTCAGACTTGGTATTGAGAACCACAACCTTG
TTCTTAAACTCAACCATGTGTCTGAGTCCCATGACAGAGCCCTCAATAGAAGGCATGCCT
TAAGGAAGAAACTTATGATCTACGTCAAATGGTAGCAGACATGCAAATTAGAATCTC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005874A_C01 KMC005874A_c01
         (537 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK01953.1| bZIP [Phaseolus acutifolius]                            80  1e-14
gb|AAK25822.1|AF350505_1 bZip transcription factor [Phaseolus vu...    80  2e-14
ref|NP_189674.1| bZIP family transcription factor; protein id: A...    62  3e-12
ref|NP_172817.2| bZIP family transcription factor; protein id: A...    63  8e-11
ref|NP_178489.1| bZIP protein; protein id: At2g04038.1 [Arabidop...    53  3e-07

>gb|AAK01953.1| bZIP [Phaseolus acutifolius]
          Length = 193

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 44/90 (48%), Positives = 59/90 (64%), Gaps = 1/90 (1%)
 Frame = +3

Query: 225 AHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQFS-HRSRMKKQKHLNGLWSKVVRLG 401
           A  SCL +N T  EA+E+QF    +         + S  RSRM+KQKHL+ LWS+VVRL 
Sbjct: 57  APHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLR 116

Query: 402 IENHNLVLKLNHVSESHDRALNRRHALRKK 491
            ENHNL+ KLNH+S+SHDR L +   L+++
Sbjct: 117 TENHNLIDKLNHMSDSHDRVLQKNTRLKEE 146

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 43/129 (33%), Positives = 57/129 (43%), Gaps = 5/129 (3%)
 Frame = +2

Query: 164 NLYLNSLLSIEPNFHFPI*ICSFFMPRQ--QWNLC*SK*TSVQ--IIGKRKHR*MMSNTV 331
           NL+LN+LLS  PN HFP     F  P      N    +   +Q  II +RKHR M+SN  
Sbjct: 33  NLHLNTLLSNFPNCHFPPSGLEFVAPHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRE 92

Query: 332 FP-QIKDEEAKALERTVVKGCQTWY*EPQPCS*TQPCV*VP*QSPQ*KACLKEETYDLRQ 508
              + +  + K L+    +  +                    +  Q    LKEE  DLRQ
Sbjct: 93  SARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSDSHDRVLQKNTRLKEEASDLRQ 152

Query: 509 MVADMQIRI 535
           M+ADMQI I
Sbjct: 153 MLADMQIGI 161

>gb|AAK25822.1|AF350505_1 bZip transcription factor [Phaseolus vulgaris]
          Length = 193

 Score = 79.7 bits (195), Expect = 2e-14
 Identities = 44/90 (48%), Positives = 58/90 (63%), Gaps = 1/90 (1%)
 Frame = +3

Query: 225 AHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQFS-HRSRMKKQKHLNGLWSKVVRLG 401
           A  SCL +N T  EA+E+QF    +         + S  RSRM+KQKHL+ LWS+VVRL 
Sbjct: 57  APHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLR 116

Query: 402 IENHNLVLKLNHVSESHDRALNRRHALRKK 491
            ENHNL+ KLNH+S+SHDR L     L+++
Sbjct: 117 TENHNLIDKLNHMSDSHDRVLQENTRLKEE 146

 Score = 35.8 bits (81), Expect = 0.34
 Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
 Frame = +2

Query: 164 NLYLNSLLSIEPNFHFPI*ICSFFMPRQ--QWNLC*SK*TSVQ--IIGKRKHR*MMSNTV 331
           NL+LN+LLS  PN HFP     F  P      N    +   +Q  II +RKHR M+SN  
Sbjct: 33  NLHLNTLLSNFPNCHFPPSGLEFVAPHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRE 92

Query: 332 FP-QIKDEEAKALERTVVKGCQTWY*EPQPCS*TQPCV*VP*QSPQ*KACLKEETYDLRQ 508
              + +  + K L+    +  +                    +  Q    LKEE  DLRQ
Sbjct: 93  SARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSDSHDRVLQENTRLKEEASDLRQ 152

Query: 509 MVADMQI 529
           M+ADMQI
Sbjct: 153 MLADMQI 159

>ref|NP_189674.1| bZIP family transcription factor; protein id: At3g30530.1
           [Arabidopsis thaliana] gi|9279562|dbj|BAB01020.1|
           gene_id:MQP15.3~unknown protein [Arabidopsis thaliana]
          Length = 173

 Score = 62.0 bits (149), Expect(2) = 3e-12
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +3

Query: 234 SCLDNNGTYAEANELQFR*SAKGSTGE*CLT---QFSHRSRMKKQKHLNGLWSKVVRLGI 404
           S   NN T  EA E Q   +      +  +    + + RSRM+KQ+HL+ LWS+V+ L I
Sbjct: 57  SLSSNNSTSDEAEEQQTNNNIINERKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRI 116

Query: 405 ENHNLVLKLNHVSESHDRALNRRHALRKK 491
           ENH L+ KLN++SESHD+ L     L+++
Sbjct: 117 ENHQLLDKLNNLSESHDKVLQENAQLKEE 145

 Score = 30.8 bits (68), Expect(2) = 3e-12
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +2

Query: 464 Q*KACLKEETYDLRQMVADMQIR 532
           Q  A LKEET++L+Q+++DMQI+
Sbjct: 137 QENAQLKEETFELKQVISDMQIQ 159

>ref|NP_172817.2| bZIP family transcription factor; protein id: At1g13600.1,
           supported by cDNA: gi_12083267 [Arabidopsis thaliana]
           gi|25511714|pir||A86269 probable bZIP DNA-binding
           protein - Arabidopsis thaliana
           gi|8920564|gb|AAF81286.1|AC027656_3 Contains similarity
           to bZIP DNA-binding protein HBF-1 - soybean from Glycine
           max gb|Y10685.  It contains a bZIP transcription factor
           PF|00170. EST gb|N37717 comes from this gene.
           [Arabidopsis thaliana]
           gi|9802757|gb|AAF99826.1|AC027134_8 Hypothetical protein
           [Arabidopsis thaliana]
           gi|12083268|gb|AAG48793.1|AF332430_1 putative bZIP
           transcription factor [Arabidopsis thaliana]
          Length = 196

 Score = 62.8 bits (151), Expect(2) = 8e-11
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 17/117 (14%)
 Frame = +3

Query: 192 SSQTSTFPSEFAHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQF------------- 332
           SS TS   S F H + L NN  Y+ ++  Q   ++  ST +    Q              
Sbjct: 36  SSPTSC--SSFYHLNGLINNNNYSSSSNGQDLMTSNNSTSDEDHQQSMVIDERKQRRMIS 93

Query: 333 ----SHRSRMKKQKHLNGLWSKVVRLGIENHNLVLKLNHVSESHDRALNRRHALRKK 491
               + RSRM+KQ+HL+ LWS+V+RL  +NH L+ KLN VSESH+ AL     L+++
Sbjct: 94  NRESARRSRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEE 150

 Score = 25.0 bits (53), Expect(2) = 8e-11
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 473 ACLKEETYDLRQMVADMQ 526
           A LKEET DLRQ++++++
Sbjct: 145 AKLKEETSDLRQLISEIK 162

>ref|NP_178489.1| bZIP protein; protein id: At2g04038.1 [Arabidopsis thaliana]
           gi|20198170|gb|AAM15441.1| bZIP protein (AtbZIP48)
           [Arabidopsis thaliana]
          Length = 166

 Score = 52.8 bits (125), Expect(2) = 3e-07
 Identities = 25/53 (47%), Positives = 38/53 (71%)
 Frame = +3

Query: 333 SHRSRMKKQKHLNGLWSKVVRLGIENHNLVLKLNHVSESHDRALNRRHALRKK 491
           + RSRM+KQ+HL+ LWS+V+RL  EN+ L+ KLN VSE+ +  L     L+++
Sbjct: 86  ARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQNCVLKENSKLKEE 138

 Score = 23.1 bits (48), Expect(2) = 3e-07
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 479 LKEETYDLRQMVADMQ 526
           LKEE  DLRQ+V +++
Sbjct: 135 LKEEASDLRQLVCELK 150

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,914,482
Number of Sequences: 1393205
Number of extensions: 8633305
Number of successful extensions: 17575
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 17215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17572
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD031d03_f BP046457 1 537
2 GENLf009b06 BP062806 3 530
3 SPDL009h03_f BP052556 55 459




Lotus japonicus
Kazusa DNA Research Institute