KMC005874A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC005874A_C01 KMC005874A_c01
aaAACATTAACTTTCCTTACATGATTTACATAGAATTTAAACCAAATAACCTTATCAATG
TAAAAAAATATTCCACCAAATCCGCTAAATGGGTTTGAAGCATTAATTCAATGTATTGGC
TTTTTCAAATACAAACAAATAGATAATCAGTACATACTCATAAAACCTTTATCTAAATAG
CCTCTTAAGCATCGAGCCAAACTTCCACTTTCCCATCTGAATTTGCTCATTCTTCATGCC
TCGACAACAATGGAACTTATGCTGAAGCAAATGAACTTCAGTTCAGATAATCGGCAAAAG
GAAGCACAGGTGAATGATGTCTAACACAGTTTTCCCACAGATCAAGGATGAAGAAGCAAA
AGCACTTGAACGGACTGTGGTCAAAGGTTGTCAGACTTGGTATTGAGAACCACAACCTTG
TTCTTAAACTCAACCATGTGTCTGAGTCCCATGACAGAGCCCTCAATAGAAGGCATGCCT
TAAGGAAGAAACTTATGATCTACGTCAAATGGTAGCAGACATGCAAATTAGAATCTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005874A_C01 KMC005874A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK01953.1| bZIP [Phaseolus acutifolius] 80 1e-14
gb|AAK25822.1|AF350505_1 bZip transcription factor [Phaseolus vu... 80 2e-14
ref|NP_189674.1| bZIP family transcription factor; protein id: A... 62 3e-12
ref|NP_172817.2| bZIP family transcription factor; protein id: A... 63 8e-11
ref|NP_178489.1| bZIP protein; protein id: At2g04038.1 [Arabidop... 53 3e-07
>gb|AAK01953.1| bZIP [Phaseolus acutifolius]
Length = 193
Score = 80.5 bits (197), Expect = 1e-14
Identities = 44/90 (48%), Positives = 59/90 (64%), Gaps = 1/90 (1%)
Frame = +3
Query: 225 AHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQFS-HRSRMKKQKHLNGLWSKVVRLG 401
A SCL +N T EA+E+QF + + S RSRM+KQKHL+ LWS+VVRL
Sbjct: 57 APHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLR 116
Query: 402 IENHNLVLKLNHVSESHDRALNRRHALRKK 491
ENHNL+ KLNH+S+SHDR L + L+++
Sbjct: 117 TENHNLIDKLNHMSDSHDRVLQKNTRLKEE 146
Score = 36.6 bits (83), Expect = 0.20
Identities = 43/129 (33%), Positives = 57/129 (43%), Gaps = 5/129 (3%)
Frame = +2
Query: 164 NLYLNSLLSIEPNFHFPI*ICSFFMPRQ--QWNLC*SK*TSVQ--IIGKRKHR*MMSNTV 331
NL+LN+LLS PN HFP F P N + +Q II +RKHR M+SN
Sbjct: 33 NLHLNTLLSNFPNCHFPPSGLEFVAPHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRE 92
Query: 332 FP-QIKDEEAKALERTVVKGCQTWY*EPQPCS*TQPCV*VP*QSPQ*KACLKEETYDLRQ 508
+ + + K L+ + + + Q LKEE DLRQ
Sbjct: 93 SARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSDSHDRVLQKNTRLKEEASDLRQ 152
Query: 509 MVADMQIRI 535
M+ADMQI I
Sbjct: 153 MLADMQIGI 161
>gb|AAK25822.1|AF350505_1 bZip transcription factor [Phaseolus vulgaris]
Length = 193
Score = 79.7 bits (195), Expect = 2e-14
Identities = 44/90 (48%), Positives = 58/90 (63%), Gaps = 1/90 (1%)
Frame = +3
Query: 225 AHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQFS-HRSRMKKQKHLNGLWSKVVRLG 401
A SCL +N T EA+E+QF + + S RSRM+KQKHL+ LWS+VVRL
Sbjct: 57 APHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLR 116
Query: 402 IENHNLVLKLNHVSESHDRALNRRHALRKK 491
ENHNL+ KLNH+S+SHDR L L+++
Sbjct: 117 TENHNLIDKLNHMSDSHDRVLQENTRLKEE 146
Score = 35.8 bits (81), Expect = 0.34
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Frame = +2
Query: 164 NLYLNSLLSIEPNFHFPI*ICSFFMPRQ--QWNLC*SK*TSVQ--IIGKRKHR*MMSNTV 331
NL+LN+LLS PN HFP F P N + +Q II +RKHR M+SN
Sbjct: 33 NLHLNTLLSNFPNCHFPPSGLEFVAPHSCLSSNSTSDEADEIQFNIIDERKHRRMISNRE 92
Query: 332 FP-QIKDEEAKALERTVVKGCQTWY*EPQPCS*TQPCV*VP*QSPQ*KACLKEETYDLRQ 508
+ + + K L+ + + + Q LKEE DLRQ
Sbjct: 93 SARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSDSHDRVLQENTRLKEEASDLRQ 152
Query: 509 MVADMQI 529
M+ADMQI
Sbjct: 153 MLADMQI 159
>ref|NP_189674.1| bZIP family transcription factor; protein id: At3g30530.1
[Arabidopsis thaliana] gi|9279562|dbj|BAB01020.1|
gene_id:MQP15.3~unknown protein [Arabidopsis thaliana]
Length = 173
Score = 62.0 bits (149), Expect(2) = 3e-12
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +3
Query: 234 SCLDNNGTYAEANELQFR*SAKGSTGE*CLT---QFSHRSRMKKQKHLNGLWSKVVRLGI 404
S NN T EA E Q + + + + + RSRM+KQ+HL+ LWS+V+ L I
Sbjct: 57 SLSSNNSTSDEAEEQQTNNNIINERKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRI 116
Query: 405 ENHNLVLKLNHVSESHDRALNRRHALRKK 491
ENH L+ KLN++SESHD+ L L+++
Sbjct: 117 ENHQLLDKLNNLSESHDKVLQENAQLKEE 145
Score = 30.8 bits (68), Expect(2) = 3e-12
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +2
Query: 464 Q*KACLKEETYDLRQMVADMQIR 532
Q A LKEET++L+Q+++DMQI+
Sbjct: 137 QENAQLKEETFELKQVISDMQIQ 159
>ref|NP_172817.2| bZIP family transcription factor; protein id: At1g13600.1,
supported by cDNA: gi_12083267 [Arabidopsis thaliana]
gi|25511714|pir||A86269 probable bZIP DNA-binding
protein - Arabidopsis thaliana
gi|8920564|gb|AAF81286.1|AC027656_3 Contains similarity
to bZIP DNA-binding protein HBF-1 - soybean from Glycine
max gb|Y10685. It contains a bZIP transcription factor
PF|00170. EST gb|N37717 comes from this gene.
[Arabidopsis thaliana]
gi|9802757|gb|AAF99826.1|AC027134_8 Hypothetical protein
[Arabidopsis thaliana]
gi|12083268|gb|AAG48793.1|AF332430_1 putative bZIP
transcription factor [Arabidopsis thaliana]
Length = 196
Score = 62.8 bits (151), Expect(2) = 8e-11
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 17/117 (14%)
Frame = +3
Query: 192 SSQTSTFPSEFAHSSCLDNNGTYAEANELQFR*SAKGSTGE*CLTQF------------- 332
SS TS S F H + L NN Y+ ++ Q ++ ST + Q
Sbjct: 36 SSPTSC--SSFYHLNGLINNNNYSSSSNGQDLMTSNNSTSDEDHQQSMVIDERKQRRMIS 93
Query: 333 ----SHRSRMKKQKHLNGLWSKVVRLGIENHNLVLKLNHVSESHDRALNRRHALRKK 491
+ RSRM+KQ+HL+ LWS+V+RL +NH L+ KLN VSESH+ AL L+++
Sbjct: 94 NRESARRSRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEE 150
Score = 25.0 bits (53), Expect(2) = 8e-11
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 473 ACLKEETYDLRQMVADMQ 526
A LKEET DLRQ++++++
Sbjct: 145 AKLKEETSDLRQLISEIK 162
>ref|NP_178489.1| bZIP protein; protein id: At2g04038.1 [Arabidopsis thaliana]
gi|20198170|gb|AAM15441.1| bZIP protein (AtbZIP48)
[Arabidopsis thaliana]
Length = 166
Score = 52.8 bits (125), Expect(2) = 3e-07
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +3
Query: 333 SHRSRMKKQKHLNGLWSKVVRLGIENHNLVLKLNHVSESHDRALNRRHALRKK 491
+ RSRM+KQ+HL+ LWS+V+RL EN+ L+ KLN VSE+ + L L+++
Sbjct: 86 ARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQNCVLKENSKLKEE 138
Score = 23.1 bits (48), Expect(2) = 3e-07
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 479 LKEETYDLRQMVADMQ 526
LKEE DLRQ+V +++
Sbjct: 135 LKEEASDLRQLVCELK 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,914,482
Number of Sequences: 1393205
Number of extensions: 8633305
Number of successful extensions: 17575
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 17215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17572
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPD031d03_f |
BP046457 |
1 |
537 |
2 |
GENLf009b06 |
BP062806 |
3 |
530 |
3 |
SPDL009h03_f |
BP052556 |
55 |
459 |
|
Lotus japonicus
Kazusa DNA Research Institute