Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005873A_C01 KMC005873A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79506.1|AC002328_14 F20N2.11 [Arabidopsis thaliana] 68 8e-11
ref|NP_175965.1| Phosphatidylinositol Transfer Protein, putative... 68 8e-11
dbj|BAB02894.1| phosphatidylinositol/phosphatidylcholine transfe... 55 7e-07
ref|NP_200427.1| putative protein; protein id: At5g56160.1 [Arab... 48 9e-05
ref|NP_189128.1| phosphatidylinositol transfer protein, putative... 38 0.069
>gb|AAF79506.1|AC002328_14 F20N2.11 [Arabidopsis thaliana]
Length = 636
Score = 67.8 bits (164), Expect = 8e-11
Identities = 30/51 (58%), Positives = 43/51 (83%)
Frame = -2
Query: 539 KEKMLMDSMDRIKSVEFDLEKTKRVLHSAVKQQLEIADLVENLQKSNCRQR 387
KE+MLMDS+DRIKSVEFDL+KTKR+LH+ V +Q+EI ++++N++ S R
Sbjct: 585 KERMLMDSLDRIKSVEFDLDKTKRLLHATVMKQMEITEMLQNIRDSQLHVR 635
>ref|NP_175965.1| Phosphatidylinositol Transfer Protein, putative; protein id:
At1g55690.1 [Arabidopsis thaliana]
Length = 648
Score = 67.8 bits (164), Expect = 8e-11
Identities = 30/51 (58%), Positives = 43/51 (83%)
Frame = -2
Query: 539 KEKMLMDSMDRIKSVEFDLEKTKRVLHSAVKQQLEIADLVENLQKSNCRQR 387
KE+MLMDS+DRIKSVEFDL+KTKR+LH+ V +Q+EI ++++N++ S R
Sbjct: 597 KERMLMDSLDRIKSVEFDLDKTKRLLHATVMKQMEITEMLQNIRDSQLHVR 647
>dbj|BAB02894.1| phosphatidylinositol/phosphatidylcholine transfer protein-like
[Arabidopsis thaliana]
Length = 627
Score = 54.7 bits (130), Expect = 7e-07
Identities = 25/54 (46%), Positives = 39/54 (71%)
Frame = -2
Query: 539 KEKMLMDSMDRIKSVEFDLEKTKRVLHSAVKQQLEIADLVENLQKSNCRQRRLF 378
KE +L DS+DRIKS+E DL+KTK+ L +Q+E+A+ ENL++S+ + +F
Sbjct: 519 KEDILRDSLDRIKSIEQDLQKTKKALFLTASKQIELAECFENLKESSSTNKFIF 572
>ref|NP_200427.1| putative protein; protein id: At5g56160.1 [Arabidopsis thaliana]
gi|9758636|dbj|BAB09298.1| contains similarity to
phosphatidylinositol/phosphatidylcholine transfer
protein~gene_id:MDA7.22 [Arabidopsis thaliana]
Length = 592
Score = 47.8 bits (112), Expect = 9e-05
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = -2
Query: 536 EKMLMDSMDRIKSVEFDLEKTKRVLHSAVKQQLEIADLVEN 414
EK+L +S++RIKS+E DL+KTK VLH + +QL+I + +E+
Sbjct: 541 EKLLAESLERIKSLELDLDKTKSVLHITLTKQLQITEQLES 581
>ref|NP_189128.1| phosphatidylinositol transfer protein, putative; protein id:
At3g24840.1 [Arabidopsis thaliana]
Length = 535
Score = 38.1 bits (87), Expect = 0.069
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = -2
Query: 539 KEKMLMDSMDRIKSVEFDLEKTKRV 465
KE +L DS+DRIKS+E DL+KTK+V
Sbjct: 490 KEDILRDSLDRIKSIEQDLQKTKKV 514
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,965,065
Number of Sequences: 1393205
Number of extensions: 8807894
Number of successful extensions: 25792
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25768
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
