Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005872A_C01 KMC005872A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188946.2| RING zinc finger protein, putative; protein id:... 34 1.3
gb|EAA05001.1| agCP5318 [Anopheles gambiae str. PEST] 32 4.8
emb|CAA91115.1| serine protease [Lactobacillus sakei] 32 4.8
ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [A... 32 6.2
emb|CAA18118.1| hypothetical protein (fragment) [Arabidopsis tha... 32 6.2
>ref|NP_188946.2| RING zinc finger protein, putative; protein id: At3g23060.1,
supported by cDNA: gi_20466757 [Arabidopsis thaliana]
gi|9294195|dbj|BAB02097.1| gene_id:MXC7.9~unknown
protein [Arabidopsis thaliana]
gi|20466758|gb|AAM20696.1| RING zinc finger protein,
putative [Arabidopsis thaliana]
Length = 480
Score = 34.3 bits (77), Expect = 1.3
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 6/73 (8%)
Frame = +1
Query: 196 SACCYNLQDF---IRFLTKYFL-QSGSESEEGD--WTRERVCILKMGLHNSVDWNMQSFE 357
+ACC ++D + +L KY + + G ESE+ W R+ + LHN VDW +Q+
Sbjct: 385 TACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIWLRDEPVCSSLTLHNLVDWWVQTTP 444
Query: 358 FTVCN*RRQNSMI 396
RQ++M+
Sbjct: 445 LP----ERQSAMV 453
>gb|EAA05001.1| agCP5318 [Anopheles gambiae str. PEST]
Length = 979
Score = 32.3 bits (72), Expect = 4.8
Identities = 12/37 (32%), Positives = 19/37 (50%)
Frame = -3
Query: 533 NQRWNITESGE*CSKCARKRKGRGDISIRSCLHECIR 423
+ RW + + G C C RK +G D+ + +H C R
Sbjct: 252 HSRWTLIKRGSRCRTCLRKHQGACDVHVLCGMHGCER 288
>emb|CAA91115.1| serine protease [Lactobacillus sakei]
Length = 266
Score = 32.3 bits (72), Expect = 4.8
Identities = 25/108 (23%), Positives = 48/108 (44%)
Frame = -1
Query: 583 SSLSSIKKTAATTRGLATKDGTSLNQENSAASVHGRGKGAETSASEVVYTNAYAGRTRRK 404
SS++ + + TT K +S++ N+ AS+HG S + + +++K
Sbjct: 27 SSIALLDENINTTHSYLQKHFSSISGHNNTASIHGTAMAGVLSIASL---------SKQK 77
Query: 403 V*ISCCFDAFSYRQ*TQKTAYSNQLNCAVPFLEYILFPSSSHLPQTQS 260
+ + D Y Q T+K+ S + + I+FP S LP+ +
Sbjct: 78 LTVFNTLD--KYHQRTRKSVISALKMAIINNFKLIIFPMSIILPKASN 123
>ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [Arabidopsis thaliana]
gi|7487187|pir||T05505 hypothetical protein T19K4.250 -
Arabidopsis thaliana gi|3036816|emb|CAA18506.1|
myosin-like protein [Arabidopsis thaliana]
gi|7270564|emb|CAB81521.1| myosin-like protein
[Arabidopsis thaliana]
Length = 981
Score = 32.0 bits (71), Expect = 6.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 77 FSRWGAVEHNVKNFSVQIKTCCPKMRLMTARITIFSAVLIQHAAIIYRILSGF 235
++ +E VK F VQ+K K+ L + I ++++QHA + +SG+
Sbjct: 58 YTHMSRMEDQVKLFEVQVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVSGW 110
>emb|CAA18118.1| hypothetical protein (fragment) [Arabidopsis thaliana]
Length = 321
Score = 32.0 bits (71), Expect = 6.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 77 FSRWGAVEHNVKNFSVQIKTCCPKMRLMTARITIFSAVLIQHAAIIYRILSGF 235
++ +E VK F VQ+K K+ L + I ++++QHA + +SG+
Sbjct: 58 YTHMSRMEDQVKLFEVQVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVSGW 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,383,157
Number of Sequences: 1393205
Number of extensions: 9007702
Number of successful extensions: 24251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24202
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
