Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005864A_C01 KMC005864A_c01
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86310 protein F1L3.4 [imported] - Arabidopsis thaliana gi|... 63 3e-09
ref|NP_564020.1| hypothetical protein; protein id: At1g17390.1 [... 63 3e-09
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 61 2e-08
ref|NP_680357.1| similar to non-LTR reverse transcriptase, putat... 59 4e-08
ref|NP_179822.1| putative non-LTR retroelement reverse transcrip... 58 1e-07
>pir||D86310 protein F1L3.4 [imported] - Arabidopsis thaliana
gi|8778482|gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis
thaliana]
Length = 253
Score = 63.2 bits (152), Expect = 3e-09
Identities = 44/126 (34%), Positives = 62/126 (48%), Gaps = 2/126 (1%)
Frame = -2
Query: 653 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 474
W P G FKLN DG+S GN A GG++RDG N+ +GFS+ + + L
Sbjct: 85 WSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYY 144
Query: 473 GLLVCKPLGYDGIGIECDSNIVVSWIRSRSCQLWYLWDF*GPLKGLLDVKDYS--IHHIF 300
GL + G + +E DS +VV ++R+ L GLL KD+S I H++
Sbjct: 145 GLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLS-KDWSVRISHVY 203
Query: 299 RAQRRL 282
R RL
Sbjct: 204 REANRL 209
>ref|NP_564020.1| hypothetical protein; protein id: At1g17390.1 [Arabidopsis
thaliana] gi|9665118|gb|AAF97302.1|AC007843_5
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 63.2 bits (152), Expect = 3e-09
Identities = 44/126 (34%), Positives = 62/126 (48%), Gaps = 2/126 (1%)
Frame = -2
Query: 653 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 474
W P G FKLN DG+S GN A GG++RDG N+ +GFS+ + + L
Sbjct: 104 WSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYY 163
Query: 473 GLLVCKPLGYDGIGIECDSNIVVSWIRSRSCQLWYLWDF*GPLKGLLDVKDYS--IHHIF 300
GL + G + +E DS +VV ++R+ L GLL KD+S I H++
Sbjct: 164 GLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLS-KDWSVRISHVY 222
Query: 299 RAQRRL 282
R RL
Sbjct: 223 REANRL 228
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 60.8 bits (146), Expect = 2e-08
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = -2
Query: 653 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 474
W KP G +N DG+S GN G A GG++RD +++ GF++ + V L +
Sbjct: 508 WRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYY 567
Query: 473 GLLVCKPLGYDGIGIECDSNIVVSWIRS 390
GL+V G+ + +E DS +VV +++S
Sbjct: 568 GLVVAWERGWRRVRLEVDSALVVGFLQS 595
>ref|NP_680357.1| similar to non-LTR reverse transcriptase, putative; protein id:
At5g36905.1 [Arabidopsis thaliana]
Length = 633
Score = 59.3 bits (142), Expect = 4e-08
Identities = 30/89 (33%), Positives = 47/89 (52%)
Frame = -2
Query: 656 RWLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAIL 477
+W P G FKLN DG+S GN G A GG++RDG + GF + + + L +
Sbjct: 451 KWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGVY 510
Query: 476 EGLLVCKPLGYDGIGIECDSNIVVSWIRS 390
GL + G + +E DS +VV ++++
Sbjct: 511 YGLHIAWERGIRRLELEVDSTLVVGFLQA 539
>ref|NP_179822.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g22350.1 [Arabidopsis thaliana]
gi|25412100|pir||F84611 hypothetical protein At2g22350
[imported] - Arabidopsis thaliana
gi|4544460|gb|AAD22368.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 321
Score = 57.8 bits (138), Expect = 1e-07
Identities = 31/86 (36%), Positives = 46/86 (53%)
Frame = -2
Query: 653 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 474
W+ P G KLN DG+S GN G A GG+LRD + +I GF++ + V L +
Sbjct: 153 WVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYY 212
Query: 473 GLLVCKPLGYDGIGIECDSNIVVSWI 396
GL + G + +E DS +VV ++
Sbjct: 213 GLFIAWGRGARRVELEVDSKMVVGFL 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,133,670
Number of Sequences: 1393205
Number of extensions: 13128410
Number of successful extensions: 50990
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 44798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50430
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
