Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005862A_C01 KMC005862A_c01
(892 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA77135.1| U2 snRNP auxiliary factor, large subunit [Nicoti... 291 9e-78
gb|AAG01126.1|AF273333_11 BAC19.11 [Lycopersicon esculentum] 285 6e-76
pir||E96634 probable U2 snRNP auxiliary factor T7P1.5 [imported]... 282 5e-75
gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis t... 282 5e-75
ref|NP_176287.2| splicing factor U2AF 65 kDa subunit, putative; ... 282 5e-75
>emb|CAA77135.1| U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia]
Length = 573
Score = 291 bits (745), Expect = 9e-78
Identities = 144/235 (61%), Positives = 180/235 (76%), Gaps = 1/235 (0%)
Frame = -3
Query: 821 GGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 642
GG +G DRIFVGGLPYYF E QIRELL++FGPLR FDLV+D+ETGNSKGY FC+YQD +V
Sbjct: 353 GGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSV 412
Query: 641 TDMACASLNGLKMGDKTLTVRRATV-SGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 465
TD+ACA+LNG+KMGDKTLTVRRA + K EQE + AQQ I +Q++ L+
Sbjct: 413 TDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQ------- 465
Query: 464 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 285
P T+ ATKVL LTE I+ DEL D+E+Y++I+EDMR ECGKFG+L+NVVIPRP+
Sbjct: 466 -----PATL---ATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPS 517
Query: 284 PSGEXTPGIGKVFLEYSDTAASFAAQSALNGRKFGGXMVTAYYYPEEKFHNMEFD 120
P+GE TPG+GKVFLEY+D +S A+ +LNGRKFGG V A +YPE KF+ ++D
Sbjct: 518 PNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYD 572
>gb|AAG01126.1|AF273333_11 BAC19.11 [Lycopersicon esculentum]
Length = 532
Score = 285 bits (729), Expect = 6e-76
Identities = 141/236 (59%), Positives = 175/236 (73%), Gaps = 1/236 (0%)
Frame = -3
Query: 824 NGGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPA 645
+GG +G DRIFVGGLPYYF E QIRELL++FG LR FDLV+D+ETGNSKGY FC+YQD +
Sbjct: 311 SGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVS 370
Query: 644 VTDMACASLNGLKMGDKTLTVRRATV-SGHSKTEQEHIFAQAQQNITMQKVALEVVGLNI 468
VTD+ACA+LNG+KMGDKTLTVRRA + EQE + AQQ I +Q+ L+
Sbjct: 371 VTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQ------ 424
Query: 467 PGVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRP 288
PG ATKVLCLTE ++ DEL D+++Y++I+EDMR ECGKFG L+NVVIPRP
Sbjct: 425 PGA---------LATKVLCLTEVVSVDELKDDDDYQDILEDMRIECGKFGALLNVVIPRP 475
Query: 287 NPSGEXTPGIGKVFLEYSDTAASFAAQSALNGRKFGGXMVTAYYYPEEKFHNMEFD 120
NP+GE TPG+GKVFLEY+D +S A+ LNGRKFGG V A +YPE KF +++
Sbjct: 476 NPNGEPTPGLGKVFLEYADVDSSSKARQGLNGRKFGGNQVIAVFYPENKFSEGDYE 531
>pir||E96634 probable U2 snRNP auxiliary factor T7P1.5 [imported] - Arabidopsis
thaliana gi|12323333|gb|AAG51641.1|AC018908_7 putative U2
snRNP auxiliary factor; 19096-22891 [Arabidopsis
thaliana]
Length = 568
Score = 282 bits (721), Expect = 5e-75
Identities = 137/235 (58%), Positives = 172/235 (72%), Gaps = 1/235 (0%)
Frame = -3
Query: 821 GGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 642
GG +G DRIFVGGLPYYF E QIRELL++FGPLR F+LV+D+ETGNSKGY FC+YQDP+V
Sbjct: 348 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 407
Query: 641 TDMACASLNGLKMGDKTLTVRRATVSG-HSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 465
TD+ACA+LNG+KMGDKTLTVRRA K EQE + AQQ I +Q++ + G
Sbjct: 408 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG---- 463
Query: 464 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 285
+ TK++CLT+ +T D+L D+EEY EI+EDMR E GKFG L+NVVIPRPN
Sbjct: 464 -----------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPN 512
Query: 284 PSGEXTPGIGKVFLEYSDTAASFAAQSALNGRKFGGXMVTAYYYPEEKFHNMEFD 120
P + TPG+GKVFLEY+D S A+S +NGRKFGG V A YYPE+K+ +++
Sbjct: 513 PDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 567
>gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
Length = 589
Score = 282 bits (721), Expect = 5e-75
Identities = 137/235 (58%), Positives = 172/235 (72%), Gaps = 1/235 (0%)
Frame = -3
Query: 821 GGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 642
GG +G DRIFVGGLPYYF E QIRELL++FGPLR F+LV+D+ETGNSKGY FC+YQDP+V
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 641 TDMACASLNGLKMGDKTLTVRRATVSG-HSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 465
TD+ACA+LNG+KMGDKTLTVRRA K EQE + AQQ I +Q++ + G
Sbjct: 429 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG---- 484
Query: 464 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 285
+ TK++CLT+ +T D+L D+EEY EI+EDMR E GKFG L+NVVIPRPN
Sbjct: 485 -----------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPN 533
Query: 284 PSGEXTPGIGKVFLEYSDTAASFAAQSALNGRKFGGXMVTAYYYPEEKFHNMEFD 120
P + TPG+GKVFLEY+D S A+S +NGRKFGG V A YYPE+K+ +++
Sbjct: 534 PDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588
>ref|NP_176287.2| splicing factor U2AF 65 kDa subunit, putative; protein id:
At1g60900.1 [Arabidopsis thaliana]
Length = 589
Score = 282 bits (721), Expect = 5e-75
Identities = 137/235 (58%), Positives = 172/235 (72%), Gaps = 1/235 (0%)
Frame = -3
Query: 821 GGTDGLDRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAV 642
GG +G DRIFVGGLPYYF E QIRELL++FGPLR F+LV+D+ETGNSKGY FC+YQDP+V
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 641 TDMACASLNGLKMGDKTLTVRRATVSG-HSKTEQEHIFAQAQQNITMQKVALEVVGLNIP 465
TD+ACA+LNG+KMGDKTLTVRRA K EQE + AQQ I +Q++ + G
Sbjct: 429 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG---- 484
Query: 464 GVERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPN 285
+ TK++CLT+ +T D+L D+EEY EI+EDMR E GKFG L+NVVIPRPN
Sbjct: 485 -----------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPN 533
Query: 284 PSGEXTPGIGKVFLEYSDTAASFAAQSALNGRKFGGXMVTAYYYPEEKFHNMEFD 120
P + TPG+GKVFLEY+D S A+S +NGRKFGG V A YYPE+K+ +++
Sbjct: 534 PDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 784,509,853
Number of Sequences: 1393205
Number of extensions: 17508099
Number of successful extensions: 57186
Number of sequences better than 10.0: 1960
Number of HSP's better than 10.0 without gapping: 52804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56802
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48496973238
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
