Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005860A_C01 KMC005860A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC70779.1| granule-bound glycogen (starch) synthase [Astraga... 139 4e-32
sp|O82627|UGST_ANTMA Granule-bound glycogen [starch] synthase, c... 127 1e-28
dbj|BAA82346.1| granule-bound starch synthase I [Phaseolus vulga... 127 2e-28
sp|Q43092|UGST_PEA Granule-bound glycogen [starch] synthase, chl... 123 3e-27
gb|AAO26329.1| granule bound starch synthase [Brassica rapa subs... 119 4e-26
>gb|AAC70779.1| granule-bound glycogen (starch) synthase [Astragalus membranaceus]
Length = 607
Score = 139 bits (350), Expect = 4e-32
Identities = 67/78 (85%), Positives = 72/78 (91%)
Frame = -3
Query: 754 VDPADVDKLATTVKRALQTYGTPVLKEMIQNCMAQDFSWKGPAQQWEKALLSLEVAGSEA 575
VDPADV+KLATTV RAL+TYGT LKEMI NCMAQDFSWKGPA+QWE+ALLSLEVAGSE
Sbjct: 530 VDPADVEKLATTVNRALKTYGTQALKEMILNCMAQDFSWKGPAKQWEQALLSLEVAGSEP 589
Query: 574 GIDGEEIAPLAKENVPTP 521
GIDGEE+APLAKENV TP
Sbjct: 590 GIDGEEVAPLAKENVATP 607
>sp|O82627|UGST_ANTMA Granule-bound glycogen [starch] synthase, chloroplast precursor
(GBSSI) gi|3688123|emb|CAA06958.1| granule-bound starch
synthase [Antirrhinum majus]
Length = 608
Score = 127 bits (320), Expect = 1e-28
Identities = 61/79 (77%), Positives = 67/79 (84%)
Frame = -3
Query: 757 TVDPADVDKLATTVKRALQTYGTPVLKEMIQNCMAQDFSWKGPAQQWEKALLSLEVAGSE 578
TVDPADV K+ATTV+RAL YG+ KEMIQNCMAQD SWKGPA+ WEK LLSL V+GSE
Sbjct: 530 TVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSE 589
Query: 577 AGIDGEEIAPLAKENVPTP 521
G+DGEEIAPLAKENV TP
Sbjct: 590 PGVDGEEIAPLAKENVATP 608
>dbj|BAA82346.1| granule-bound starch synthase I [Phaseolus vulgaris]
Length = 606
Score = 127 bits (318), Expect = 2e-28
Identities = 58/78 (74%), Positives = 70/78 (89%)
Frame = -3
Query: 754 VDPADVDKLATTVKRALQTYGTPVLKEMIQNCMAQDFSWKGPAQQWEKALLSLEVAGSEA 575
+DPADV+K+ATTV+RAL TYGT ++++IQNCMAQDFSWKGPA+QWEK L SL+V SEA
Sbjct: 529 IDPADVEKIATTVRRALGTYGTVAMEKIIQNCMAQDFSWKGPAKQWEKVLFSLDVGRSEA 588
Query: 574 GIDGEEIAPLAKENVPTP 521
GI+G+EIAPLAKENV TP
Sbjct: 589 GIEGDEIAPLAKENVATP 606
>sp|Q43092|UGST_PEA Granule-bound glycogen [starch] synthase, chloroplast precursor
(GBSSI) gi|2129897|pir||S61504 glycogen(starch) synthase
(EC 2.4.1.11) isoform I precursor - garden pea
gi|385411|gb|AAB26591.1| granule-bound starch synthase
isoform I, GBSSI [Pisum sativum=peas, BC1/9RR, Peptide,
603 aa] gi|887571|emb|CAA61268.1| glycogen (starch)
synthase [Pisum sativum]
Length = 603
Score = 123 bits (309), Expect = 3e-27
Identities = 59/78 (75%), Positives = 68/78 (86%)
Frame = -3
Query: 754 VDPADVDKLATTVKRALQTYGTPVLKEMIQNCMAQDFSWKGPAQQWEKALLSLEVAGSEA 575
VDP DVDKLA TVKRAL+TYGT +K++I NCMAQ+FSWK PA+ WEKALL+LEV G+ A
Sbjct: 526 VDPDDVDKLAATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVA 585
Query: 574 GIDGEEIAPLAKENVPTP 521
GIDG+EIAPLAKENV TP
Sbjct: 586 GIDGDEIAPLAKENVATP 603
>gb|AAO26329.1| granule bound starch synthase [Brassica rapa subsp. pekinensis]
Length = 191
Score = 119 bits (299), Expect = 4e-26
Identities = 56/78 (71%), Positives = 64/78 (81%)
Frame = -3
Query: 754 VDPADVDKLATTVKRALQTYGTPVLKEMIQNCMAQDFSWKGPAQQWEKALLSLEVAGSEA 575
VDP DV A V RA+ YGTP +KEM++NCM QDFSWKGPA+ WEK LLSL+VAGSEA
Sbjct: 114 VDPDDVIATAKAVARAVAVYGTPAMKEMVKNCMDQDFSWKGPARLWEKVLLSLDVAGSEA 173
Query: 574 GIDGEEIAPLAKENVPTP 521
G++GEEIAPLAKENV TP
Sbjct: 174 GVEGEEIAPLAKENVATP 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,925,287
Number of Sequences: 1393205
Number of extensions: 12860083
Number of successful extensions: 29921
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 29177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29914
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
