Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005836A_C01 KMC005836A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564716.1| expressed protein; protein id: At1g56290.1, sup... 205 4e-52
pir||F96604 protein F14G9.10 [imported] - Arabidopsis thaliana g... 205 4e-52
ref|NP_689647.1| hypothetical protein FLJ32343 [Homo sapiens] gi... 105 4e-22
dbj|BAC32358.1| unnamed protein product [Mus musculus] gi|263505... 103 2e-21
dbj|BAC28298.1| unnamed protein product [Mus musculus] 103 2e-21
>ref|NP_564716.1| expressed protein; protein id: At1g56290.1, supported by cDNA:
gi_15810332, supported by cDNA: gi_20259240 [Arabidopsis
thaliana] gi|15810333|gb|AAL07054.1| unknown protein
[Arabidopsis thaliana] gi|20259241|gb|AAM14336.1|
unknown protein [Arabidopsis thaliana]
Length = 692
Score = 205 bits (521), Expect = 4e-52
Identities = 96/116 (82%), Positives = 106/116 (90%)
Frame = -2
Query: 611 EAPLYFKKAIDEAEDEWSQHNAKKLIDTSPKGLRNSIPKNFPYFHVEFGLNQGFVHVIDD 432
E PLYFKKAIDEAE EWSQHNAKKLIDTS KGLRNSIPKNFPYFHVEFGL++GFVHVIDD
Sbjct: 576 EGPLYFKKAIDEAESEWSQHNAKKLIDTSVKGLRNSIPKNFPYFHVEFGLDKGFVHVIDD 635
Query: 431 ETQFNGSLGFNVLRGMLQLADEDMYRRRRYEAVEVQKQAVASFAKEWEPFDWTKQL 264
E QFN +LG NV+RGML+L +EDMYRRRR E+VE QK+AVA+FA+EWE FDWTKQL
Sbjct: 636 EQQFNSNLGLNVIRGMLELPEEDMYRRRRQESVESQKKAVATFAREWEHFDWTKQL 691
>pir||F96604 protein F14G9.10 [imported] - Arabidopsis thaliana
gi|12321762|gb|AAG50922.1|AC069159_23 unknown protein
[Arabidopsis thaliana]
Length = 807
Score = 205 bits (521), Expect = 4e-52
Identities = 96/116 (82%), Positives = 106/116 (90%)
Frame = -2
Query: 611 EAPLYFKKAIDEAEDEWSQHNAKKLIDTSPKGLRNSIPKNFPYFHVEFGLNQGFVHVIDD 432
E PLYFKKAIDEAE EWSQHNAKKLIDTS KGLRNSIPKNFPYFHVEFGL++GFVHVIDD
Sbjct: 691 EGPLYFKKAIDEAESEWSQHNAKKLIDTSVKGLRNSIPKNFPYFHVEFGLDKGFVHVIDD 750
Query: 431 ETQFNGSLGFNVLRGMLQLADEDMYRRRRYEAVEVQKQAVASFAKEWEPFDWTKQL 264
E QFN +LG NV+RGML+L +EDMYRRRR E+VE QK+AVA+FA+EWE FDWTKQL
Sbjct: 751 EQQFNSNLGLNVIRGMLELPEEDMYRRRRQESVESQKKAVATFAREWEHFDWTKQL 806
>ref|NP_689647.1| hypothetical protein FLJ32343 [Homo sapiens]
gi|16552432|dbj|BAB71307.1| unnamed protein product
[Homo sapiens]
Length = 740
Score = 105 bits (263), Expect = 4e-22
Identities = 51/113 (45%), Positives = 78/113 (68%)
Frame = -2
Query: 608 APLYFKKAIDEAEDEWSQHNAKKLIDTSPKGLRNSIPKNFPYFHVEFGLNQGFVHVIDDE 429
AP+YFKKAI E+++EWS + KKLID S K +R S+P+ PYF V+FGL+ GF HVI+D+
Sbjct: 627 APIYFKKAIMESDEEWSMN--KKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQ 684
Query: 428 TQFNGSLGFNVLRGMLQLADEDMYRRRRYEAVEVQKQAVASFAKEWEPFDWTK 270
+F G ++ GML + + ++R+ E+ E Q++ FA+ W+P+D+TK
Sbjct: 685 HKFPHYFGKEIIGGMLDI-EPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTK 736
>dbj|BAC32358.1| unnamed protein product [Mus musculus] gi|26350513|dbj|BAC38896.1|
unnamed protein product [Mus musculus]
Length = 887
Score = 103 bits (256), Expect = 2e-21
Identities = 51/113 (45%), Positives = 76/113 (67%)
Frame = -2
Query: 608 APLYFKKAIDEAEDEWSQHNAKKLIDTSPKGLRNSIPKNFPYFHVEFGLNQGFVHVIDDE 429
AP+YFKKAI E+++EWS + KKLID S K +R S+P+ PYF V+FGL GF H+I+D+
Sbjct: 774 APIYFKKAIMESDEEWSMN--KKLIDLSSKDIRKSVPRGLPYFAVDFGLQGGFAHIIEDQ 831
Query: 428 TQFNGSLGFNVLRGMLQLADEDMYRRRRYEAVEVQKQAVASFAKEWEPFDWTK 270
+F G ++ GML L + ++R+ E+ E Q++ FA+ W+P+D TK
Sbjct: 832 YRFPHYFGKEIIGGMLDL-EPRLWRKGIRESFEDQRKKSLQFAQWWKPYDITK 883
>dbj|BAC28298.1| unnamed protein product [Mus musculus]
Length = 434
Score = 103 bits (256), Expect = 2e-21
Identities = 51/113 (45%), Positives = 76/113 (67%)
Frame = -2
Query: 608 APLYFKKAIDEAEDEWSQHNAKKLIDTSPKGLRNSIPKNFPYFHVEFGLNQGFVHVIDDE 429
AP+YFKKAI E+++EWS + KKLID S K +R S+P+ PYF V+FGL GF H+I+D+
Sbjct: 321 APIYFKKAIMESDEEWSMN--KKLIDLSSKDIRKSVPRGLPYFAVDFGLQGGFAHIIEDQ 378
Query: 428 TQFNGSLGFNVLRGMLQLADEDMYRRRRYEAVEVQKQAVASFAKEWEPFDWTK 270
+F G ++ GML L + ++R+ E+ E Q++ FA+ W+P+D TK
Sbjct: 379 YRFPHYFGKEIIGGMLDL-EPRLWRKGIRESFEDQRKKSLQFAQWWKPYDITK 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,769,528
Number of Sequences: 1393205
Number of extensions: 10578800
Number of successful extensions: 31506
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31479
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
