Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005835A_C01 KMC005835A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52187 probable transposase [imported] - Arabidopsis thalia... 44 0.001
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g... 42 0.005
pir||A54523 histidine-rich protein - Plasmodium lophurae (fragme... 42 0.007
ref|ZP_00064659.1| hypothetical protein [Microbulbifer degradans... 41 0.012
sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72... 40 0.020
>pir||T52187 probable transposase [imported] - Arabidopsis thaliana
gi|3283026|gb|AAC25101.1| putative transposase
[Arabidopsis thaliana]
Length = 729
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/31 (64%), Positives = 24/31 (76%)
Frame = -3
Query: 638 NRLSQKKLNDIVFVHYNLRLRECQVRKRSRD 546
NRL ++LND+VFVHYNLRL+ RKRS D
Sbjct: 627 NRLEHQRLNDLVFVHYNLRLQHRSKRKRSYD 657
>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
gi|28828387|gb|AAM09303.2| similar to Plasmodium
lophurae. Histidine-rich glycoprotein precursor
[Dictyostelium discoideum]
Length = 233
Score = 42.4 bits (98), Expect = 0.005
Identities = 25/92 (27%), Positives = 34/92 (36%)
Frame = +1
Query: 223 PCNLITRSNHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQ 402
P +L +HH ++ H H HH H HHP P P HHH+
Sbjct: 67 PHHLHHHHHHHHHHHHHHHHHHHHHHHH---------HHPHHPHHH--PHHHHHPHHHHH 115
Query: 403 LNRFHIHHLVQLQKGNSYHHQSFEHWHRLSNH 498
+ H HH + +HH H H +H
Sbjct: 116 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 147
Score = 40.8 bits (94), Expect = 0.015
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*S-PVQGMIPLEALQLHHHNQLNRFHIH 423
+HH ++ H H HH H H HHP P P HHH+ + H H
Sbjct: 74 HHHHHHHHHHHHHHHHHHHHHHHP-----HHPHHHPHHHHHPHHHHHHHHHHHHHHHHHH 128
Query: 424 HLVQLQKGNSYHHQSFEHWHRLSNH 498
H + +HH H H +H
Sbjct: 129 HHHHHHHHHHHHHHHHHHHHHHHHH 153
Score = 37.0 bits (84), Expect = 0.22
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ H H HH H H HHP HHH+ + H HH
Sbjct: 79 HHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHH----HHHHHHHHHHHHHHHHHH 134
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 135 HHHHHHHHHHHHHHHHHHHHPHHH 158
Score = 33.5 bits (75), Expect = 2.4
Identities = 21/83 (25%), Positives = 28/83 (33%)
Frame = +1
Query: 250 HHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHHL 429
H+ NN+ H HH H H HH HHH+ + H HH
Sbjct: 58 HNPNNNPHHPHHLHHHHHHHHH------HHH---------------HHHHHHHHHHHHHH 96
Query: 430 VQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 97 PHHPHHHPHHHHHPHHHHHHHHH 119
>pir||A54523 histidine-rich protein - Plasmodium lophurae (fragment)
gi|552196|gb|AAA29616.1| histidine-rich protein
[Plasmodium lophurae]
Length = 140
Score = 42.0 bits (97), Expect = 0.007
Identities = 23/84 (27%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ H H HH H H HH P HHH+ FH HH
Sbjct: 30 HHHHHHHAPHHHHHHHHAPHHHHHHPWFHHHHHHP----------WFHHHHHHPWFHHHH 79
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH + H H H
Sbjct: 80 HHDAHHHHHHHHDAHHHHHHHDAH 103
Score = 39.3 bits (90), Expect = 0.045
Identities = 22/78 (28%), Positives = 29/78 (36%)
Frame = +1
Query: 250 HHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHHL 429
HH ++ D H H HH H H HH +A HHH+ H HH
Sbjct: 76 HHHHHHDAHHHHHHHHDAHHHH------HHH----------DAHHHHHHHHDAHHHHHHH 119
Query: 430 VQLQKGNSYHHQSFEHWH 483
+ +HH + H H
Sbjct: 120 HDAHHHHHHHHDAHHHHH 137
Score = 39.3 bits (90), Expect = 0.045
Identities = 21/79 (26%), Positives = 29/79 (36%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ H H HH H H HH P HHH+ + H HH
Sbjct: 39 HHHHHHHHAPHHHHHHPWFHHHHHHPWFHHHHHHPWFHHHHHHDAHHHHHHHHDAHHHHH 98
Query: 427 LVQLQKGNSYHHQSFEHWH 483
+ +HH + H H
Sbjct: 99 HHDAHHHHHHHHDAHHHHH 117
Score = 37.0 bits (84), Expect = 0.22
Identities = 22/78 (28%), Positives = 29/78 (36%)
Frame = +1
Query: 250 HHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHHL 429
HH ++ H H HH H H HH +P HHH+ + H HH
Sbjct: 1 HHHHHHAPHHHHHHHHAPHHHH------HHHHAPH-----------HHHHHHHAPHHHHH 43
Query: 430 VQLQKGNSYHHQSFEHWH 483
+ +HH F H H
Sbjct: 44 HHHAPHHHHHHPWFHHHH 61
Score = 32.7 bits (73), Expect = 4.2
Identities = 19/78 (24%), Positives = 28/78 (35%)
Frame = +1
Query: 244 SNHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIH 423
++HH ++ D H H HH H HH HHH+ + H H
Sbjct: 93 AHHHHHHHDAHHHHHHHHDAH---------HHH---------------HHHHDAHHHHHH 128
Query: 424 HLVQLQKGNSYHHQSFEH 477
H +++HH H
Sbjct: 129 H------HDAHHHHHHHH 140
Score = 31.6 bits (70), Expect = 9.3
Identities = 19/84 (22%), Positives = 28/84 (32%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH +++ H H HH H HH HHH+ + H HH
Sbjct: 1 HHHHHHAPHHHHHHHHAPHH---------HH----------------HHHHAPHHHHHHH 35
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +H H H +H
Sbjct: 36 HAPHHHHHHHHAPHHHHHHPWFHH 59
>ref|ZP_00064659.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 791
Score = 41.2 bits (95), Expect = 0.012
Identities = 43/116 (37%), Positives = 54/116 (46%)
Frame = +3
Query: 186 IQDGHLGFFTGATM*LDYSLKSS*K*FRSDSSSLASSMLACSTSGDPTATPSIVSSSRDD 365
IQ H G F G T S SS S SS +SS + S+SG T++ S SS+
Sbjct: 271 IQGNHDGSFGGVTCNGASSSGSS-----SSGSSTSSSSSSSSSSGSSTSSSSSSSSTGST 325
Query: 366 PFRGLAAPSS*SIESVSYSSSSSTPKG*FLSPSKL*TLASTIQSLSKCSSRTLSTG 533
++ SS S S S SSSSST S S T +S+ S S SS T +G
Sbjct: 326 -----SSSSSSSTSSTSSSSSSSTSSTSSSSSSSSSTSSSSSSSSSSSSSSTSGSG 376
>sp|P04929|HRPX_PLALO HISTIDINE-RICH GLYCOPROTEIN PRECURSOR gi|72400|pir||KGZQHL
histidine-rich glycoprotein precursor - Plasmodium
lophurae gi|9999|emb|CAA25698.1| histidine-rich protein
[Plasmodium lophurae] gi|224316|prf||1101401A
protein,His rich
Length = 351
Score = 40.4 bits (93), Expect = 0.020
Identities = 22/84 (26%), Positives = 31/84 (36%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ H H HH H H HH + +A HHH+ H HH
Sbjct: 237 HHHHHHGHHHHHHHHHDAHHHHH------HHHDAHHHHHHHHDAHHHHHHHHDAHHHHHH 290
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH + H H H
Sbjct: 291 HHDAHHHHHHHHDAHHHHHHHDAH 314
Score = 40.0 bits (92), Expect = 0.026
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ D H H HH H H HH +A HHH+ H HH
Sbjct: 276 HHHHHHHDAHHHHHHHHDAHHHH------HHHHDAHHHHHHHDAHHHHHHHHDAHHHHHH 329
Query: 427 LVQLQKGNSYHHQSFEHWH 483
+ +HH + H H
Sbjct: 330 HHDAHHHHHHHHDAHHHHH 348
Score = 39.3 bits (90), Expect = 0.045
Identities = 21/79 (26%), Positives = 29/79 (36%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ D H H HH H H HH HHH+ + H HH
Sbjct: 266 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH----------------HHHHHHDAHHHHH 309
Query: 427 LVQLQKGNSYHHQSFEHWH 483
+ +HH + H H
Sbjct: 310 HHDAHHHHHHHHDAHHHHH 328
Score = 38.5 bits (88), Expect = 0.076
Identities = 21/84 (25%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+H E++ H H HH HHP HHH+ L H HH
Sbjct: 89 HHEEHHHHHPHPHHHHH------------HHP--------------PHHHHHLGHHHHHH 122
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH+ H H ++H
Sbjct: 123 ----HAAHHHHHEEHHHHHHAAHH 142
Score = 37.7 bits (86), Expect = 0.13
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ D H H HH H H HH HHH+ + H HH
Sbjct: 256 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH--------------HHHHHHDAHHHHHHH 301
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 302 ----HDAHHHHHHHDAHHHHHHHH 321
Score = 37.0 bits (84), Expect = 0.22
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Frame = +1
Query: 250 HHENNSDQTHRHW---HHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHI 420
HHE + ++ H H HH+ H H HHP HHH+ + H
Sbjct: 69 HHEPHHEEHHHHHPEEHHEPHHEEHHH----HHP-------------HPHHHHHHHPPHH 111
Query: 421 HHLVQLQKGNSYHHQSFEHWHRLSNH*VNALVEHCQQE 534
HH L + +HH + H H +H +A H +E
Sbjct: 112 HH--HLGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEE 147
Score = 36.6 bits (83), Expect = 0.29
Identities = 22/84 (26%), Positives = 31/84 (36%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ D H H HH H H HH + HHH+ + H HH
Sbjct: 286 HHHHHHHDAHHHHHHHHDAHHHH------HHHDAH------------HHHHHHHDAHHHH 327
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 328 HHHHDAHHHHHHHHDAHHHHHHHH 351
Score = 35.8 bits (81), Expect = 0.49
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 HHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHHL 429
HHE + ++ H H H H HH P HHH+ L H HH
Sbjct: 85 HHEPHHEEHHHHHPHPHHH---------HHHHPP------------HHHHHLGHHHHHHH 123
Query: 430 V----QLQKGNSYHHQSFEHWHRLSNH*VNALVEH 522
++ + +HH + H H +H +A H
Sbjct: 124 AAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHH 158
Score = 35.4 bits (80), Expect = 0.64
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH ++ H H HH H H HH G HHH+ + H HH
Sbjct: 196 HHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHG-------HHHHHHHHHGHHHHH 248
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 249 HHHHDAHHHHHHHHDAHHHHHHHH 272
Score = 35.4 bits (80), Expect = 0.64
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH + + H HH H H HHP L HHH+ + H HH
Sbjct: 134 HHHHHAAHHHHHEEHHHHHHAAH------HHP------WFHHHHLGYHHHHAPHHHHHHH 181
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 182 HA---PHHHHHHHHAPHHHHHHHH 202
Score = 35.0 bits (79), Expect = 0.84
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HHE + H HH H HL HH +P A HHH+ H HH
Sbjct: 143 HHHEEHHHHHHAAHHHPWFHHHHLGY---HHHHAPHHHHHHHHAPHHHHHHHHAPHHHHH 199
Query: 427 LVQLQKGNSYHHQS-FEHWHRLSNH 498
+ +HH + H H H
Sbjct: 200 HHHAPHHHHHHHHAPHHHHHHHHGH 224
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/83 (25%), Positives = 27/83 (32%)
Frame = +1
Query: 250 HHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHHL 429
HH ++ H H HH H H HH HHH+ H HH
Sbjct: 110 HHHHHLGHHHHH-HHAAHHHHHEEHHHHHHA--------------AHHHHHEEHHHHHHA 154
Query: 430 VQLQKGNSYHHQSFEHWHRLSNH 498
+HH + H H +H
Sbjct: 155 AHHHPWFHHHHLGYHHHHAPHHH 177
Score = 33.5 bits (75), Expect = 2.4
Identities = 23/87 (26%), Positives = 29/87 (32%), Gaps = 3/87 (3%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNR---FH 417
+HH + + H HH H H HH HHH+ + FH
Sbjct: 119 HHHHHAAHHHHHEEHHHHHHAAHHHHHEEHH----------------HHHHAAHHHPWFH 162
Query: 418 IHHLVQLQKGNSYHHQSFEHWHRLSNH 498
HHL YHH H H +H
Sbjct: 163 HHHL-------GYHHHHAPHHHHHHHH 182
Score = 32.7 bits (73), Expect = 4.2
Identities = 20/84 (23%), Positives = 29/84 (33%)
Frame = +1
Query: 247 NHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIHH 426
+HH +++ H H HH H HH HHH+ + H HH
Sbjct: 177 HHHHHHAPHHHHHHHHAPHH---------HH----------------HHHHAPHHHHHHH 211
Query: 427 LVQLQKGNSYHHQSFEHWHRLSNH 498
+ +HH H H +H
Sbjct: 212 ----HAPHHHHHHHHGHHHHHHHH 231
Score = 32.7 bits (73), Expect = 4.2
Identities = 19/78 (24%), Positives = 28/78 (35%)
Frame = +1
Query: 244 SNHHENNSDQTHRHWHHQC*HVLHLVILLLHHP*SPVQGMIPLEALQLHHHNQLNRFHIH 423
++HH ++ D H H HH H HH HHH+ + H H
Sbjct: 304 AHHHHHHHDAHHHHHHHHDAH---------HHH---------------HHHHDAHHHHHH 339
Query: 424 HLVQLQKGNSYHHQSFEH 477
H +++HH H
Sbjct: 340 H------HDAHHHHHHHH 351
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,444,274
Number of Sequences: 1393205
Number of extensions: 10014040
Number of successful extensions: 37523
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 28206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33646
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
