Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005829A_C01 KMC005829A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172336.1| unknown protein; protein id: At1g08600.1 [Arabi... 72 6e-12
pir||T00713 helicase homolog F22O13.8 - Arabidopsis thaliana 72 6e-12
pir||F86218 protein F22O13.8 [imported] - Arabidopsis thaliana g... 72 6e-12
gb|AAK54297.1|AC034258_15 putative helicase [Oryza sativa (japon... 57 2e-07
ref|NP_614118.1| Archaea-specific Superfamily II helicase [Metha... 40 0.016
>ref|NP_172336.1| unknown protein; protein id: At1g08600.1 [Arabidopsis thaliana]
Length = 1447
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/79 (48%), Positives = 46/79 (58%)
Frame = -3
Query: 568 EEVQRVPLDESMPDQKPEVAVAKPHVSETRILSPRLARRFSTRKCTNLAHLLTLRSQGVK 389
EEVQRVP ES KP + + + + + RF R CT +AH LTL SQG+K
Sbjct: 1360 EEVQRVPFSESPVVPKPSPSTQTEPLPQPKGFN---RSRFVNRNCTRIAHQLTLISQGLK 1416
Query: 388 FGKSTVCGECAHEIRWEDL 332
G STVCGEC IRWED+
Sbjct: 1417 VGSSTVCGECGRVIRWEDV 1435
>pir||T00713 helicase homolog F22O13.8 - Arabidopsis thaliana
Length = 1616
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/79 (48%), Positives = 46/79 (58%)
Frame = -3
Query: 568 EEVQRVPLDESMPDQKPEVAVAKPHVSETRILSPRLARRFSTRKCTNLAHLLTLRSQGVK 389
EEVQRVP ES KP + + + + + RF R CT +AH LTL SQG+K
Sbjct: 1529 EEVQRVPFSESPVVPKPSPSTQTEPLPQPKGFN---RSRFVNRNCTRIAHQLTLISQGLK 1585
Query: 388 FGKSTVCGECAHEIRWEDL 332
G STVCGEC IRWED+
Sbjct: 1586 VGSSTVCGECGRVIRWEDV 1604
>pir||F86218 protein F22O13.8 [imported] - Arabidopsis thaliana
gi|9802554|gb|AAF99756.1|AC003981_6 F22O13.8 [Arabidopsis
thaliana]
Length = 1471
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/79 (48%), Positives = 46/79 (58%)
Frame = -3
Query: 568 EEVQRVPLDESMPDQKPEVAVAKPHVSETRILSPRLARRFSTRKCTNLAHLLTLRSQGVK 389
EEVQRVP ES KP + + + + + RF R CT +AH LTL SQG+K
Sbjct: 1384 EEVQRVPFSESPVVPKPSPSTQTEPLPQPKGFN---RSRFVNRNCTRIAHQLTLISQGLK 1440
Query: 388 FGKSTVCGECAHEIRWEDL 332
G STVCGEC IRWED+
Sbjct: 1441 VGSSTVCGECGRVIRWEDV 1459
>gb|AAK54297.1|AC034258_15 putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1492
Score = 56.6 bits (135), Expect = 2e-07
Identities = 32/75 (42%), Positives = 43/75 (56%), Gaps = 3/75 (4%)
Frame = -3
Query: 541 ESMPDQKP-EVAVAKPHVSETRILSPRLARRFST--RKCTNLAHLLTLRSQGVKFGKSTV 371
E P P E ++ +P + +R P+ + S +KC NL+HLLTLRSQG K G ST
Sbjct: 1413 ERKPSTVPTESSLIQPPKATSRSRQPQQPKITSNNQKKCNNLSHLLTLRSQGTKPGCSTS 1472
Query: 370 CGECAHEIRWEDLKK 326
C EC +I WE L +
Sbjct: 1473 CKECGQDISWETLNR 1487
>ref|NP_614118.1| Archaea-specific Superfamily II helicase [Methanopyrus kandleri
AV19] gi|19887311|gb|AAM02048.1| Archaea-specific
Superfamily II helicase [Methanopyrus kandleri AV19]
Length = 818
Score = 40.4 bits (93), Expect = 0.016
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -3
Query: 526 QKPEVAVAKPHVSET--RILSPRLARRFSTRKCTNLAHLLTLRSQGVKFGKSTVCGECAH 353
QK + +A P V+E R+L ++ + R+C + +T+ G +FG+ VCG CA
Sbjct: 63 QKADRKIALPDVAEVVDRVLGEKIEVKELCRRCL-ASDRVTVLKHGYRFGEVEVCGRCAR 121
Query: 352 EIRWEDLK 329
EI E+L+
Sbjct: 122 EILEEELR 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,677,259
Number of Sequences: 1393205
Number of extensions: 10967375
Number of successful extensions: 21982
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21967
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
