Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005825A_C01 KMC005825A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S21801 myosin heavy chain, neuronal [similarity] - rat 53 2e-06
gb|AAA36349.1| nonmuscle myosin heavy chain (NMHC) 53 2e-06
pir||A61231 myosin heavy chain nonmuscle form A - human 53 2e-06
gb|AAA59888.1| cellular myosin heavy chain 53 2e-06
ref|NP_002464.1| myosin, heavy polypeptide 9, non-muscle [Homo s... 53 2e-06
>pir||S21801 myosin heavy chain, neuronal [similarity] - rat
Length = 1999
Score = 53.1 bits (126), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (50%)
Frame = -3
Query: 476 IFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEILSLKPPISELEKEDALI 297
I +L+A E++ +L K + A+A V A+++ +I L+ ISEL+++
Sbjct: 1063 IAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESE 1122
Query: 296 IEEEFKCEDPKRNIIEEIQVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEE 132
K E KR++ EE++ L E + TAA Q+ + K E + L+KT EE
Sbjct: 1123 RASRNKAEKQKRDLGEELEALKTELEDLTDSTAAQQELRSKREQEVNILKKTLEE 1177
>gb|AAA36349.1| nonmuscle myosin heavy chain (NMHC)
Length = 1247
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (50%)
Frame = -3
Query: 476 IFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEILSLKPPISELEKEDALI 297
I +L+A E++ +L K + A+A V A+++ +I L+ ISEL+++
Sbjct: 350 IAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESE 409
Query: 296 IEEEFKCEDPKRNIIEEIQVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEE 132
K E KR++ EE++ L E + TAA Q+ + K E + L+KT EE
Sbjct: 410 RASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE 464
>pir||A61231 myosin heavy chain nonmuscle form A - human
Length = 1961
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (50%)
Frame = -3
Query: 476 IFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEILSLKPPISELEKEDALI 297
I +L+A E++ +L K + A+A V A+++ +I L+ ISEL+++
Sbjct: 1064 IAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESE 1123
Query: 296 IEEEFKCEDPKRNIIEEIQVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEE 132
K E KR++ EE++ L E + TAA Q+ + K E + L+KT EE
Sbjct: 1124 RASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE 1178
>gb|AAA59888.1| cellular myosin heavy chain
Length = 1337
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (50%)
Frame = -3
Query: 476 IFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEILSLKPPISELEKEDALI 297
I +L+A E++ +L K + A+A V A+++ +I L+ ISEL+++
Sbjct: 1064 IAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESE 1123
Query: 296 IEEEFKCEDPKRNIIEEIQVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEE 132
K E KR++ EE++ L E + TAA Q+ + K E + L+KT EE
Sbjct: 1124 RASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE 1178
>ref|NP_002464.1| myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
gi|6166599|sp|P35579|MYH9_HUMAN Myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A)
(Nonmuscle myosin heavy chain-A) (NMMHC-A)
Length = 1960
Score = 52.8 bits (125), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (50%)
Frame = -3
Query: 476 IFQLEADQEEIRQKLMKTRSKYDGAIAAVLMGASRRCEIKNEILSLKPPISELEKEDALI 297
I +L+A E++ +L K + A+A V A+++ +I L+ ISEL+++
Sbjct: 1064 IAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESE 1123
Query: 296 IEEEFKCEDPKRNIIEEIQVLSKEALEKGKETAALQKKKKKHESVLEALRKTYEE 132
K E KR++ EE++ L E + TAA Q+ + K E + L+KT EE
Sbjct: 1124 RASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE 1178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,718,661
Number of Sequences: 1393205
Number of extensions: 7045197
Number of successful extensions: 28396
Number of sequences better than 10.0: 559
Number of HSP's better than 10.0 without gapping: 26113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28102
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
