Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005823A_C01 KMC005823A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62777.1| Hypothetical protein [Oryza sativa (japonica cult... 160 1e-38
ref|NP_196066.1| putative protein; protein id: At5g04460.1 [Arab... 131 5e-30
dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultiva... 97 1e-19
ref|NP_181038.1| hypothetical protein; protein id: At2g34920.1 [... 85 5e-16
ref|NP_174371.1| hypothetical protein; protein id: At1g30860.1 [... 82 3e-15
>gb|AAN62777.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 957
Score = 160 bits (405), Expect = 1e-38
Identities = 75/107 (70%), Positives = 87/107 (81%), Gaps = 4/107 (3%)
Frame = -1
Query: 553 GMNHMQRMLEXCMDMQLELQRSVRQEVSAALNRS----AGENGSVAETSDDGSKWGHVKK 386
GM MQ+MLE CM+MQ+ELQRS++QEVSAALNRS AGE G + +DGS+W +K
Sbjct: 540 GMTSMQQMLEACMEMQMELQRSIKQEVSAALNRSLAVPAGEEGML----EDGSEWKLARK 595
Query: 385 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVE 245
GTCC+CCD IDSLLYRCGHMCTCSKCA+EL+ G GKCPLCRAPIVE
Sbjct: 596 GTCCICCDRQIDSLLYRCGHMCTCSKCASELLHGVGKCPLCRAPIVE 642
>ref|NP_196066.1| putative protein; protein id: At5g04460.1 [Arabidopsis thaliana]
gi|11358334|pir||T48442 hypothetical protein T32M21.60 -
Arabidopsis thaliana gi|7406450|emb|CAB85552.1| putative
protein [Arabidopsis thaliana]
Length = 831
Score = 131 bits (330), Expect = 5e-30
Identities = 60/73 (82%), Positives = 66/73 (90%)
Frame = -1
Query: 553 GMNHMQRMLEXCMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCC 374
GM+ MQRMLE CMDMQLELQRSVRQEVSAALNRSAG+ G AETS+DGS+W HV KGTCC
Sbjct: 759 GMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCC 818
Query: 373 VCCDSHIDSLLYR 335
VCCD+HID+LLYR
Sbjct: 819 VCCDNHIDALLYR 831
>dbj|BAC65948.1| OSJNBb0055I24.16 [Oryza sativa (japonica cultivar-group)]
Length = 826
Score = 97.1 bits (240), Expect = 1e-19
Identities = 43/104 (41%), Positives = 70/104 (66%)
Frame = -1
Query: 541 MQRMLEXCMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCD 362
+++++E C+ Q+++Q S+++E+ +AL R AG S +T K+G+CC+C
Sbjct: 729 LRKLVESCIASQVKIQHSIKEEMCSAL-REAGLMPSQPDTP--------AKRGSCCICHQ 779
Query: 361 SHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAY 230
+ +DSLLYRCGHMCTC CA++L CP+C++PI +VVRA+
Sbjct: 780 TQVDSLLYRCGHMCTCFNCADQLKSSNRSCPICQSPIEDVVRAH 823
>ref|NP_181038.1| hypothetical protein; protein id: At2g34920.1 [Arabidopsis
thaliana] gi|7485803|pir||T00474 hypothetical protein
At2g34920 [imported] - Arabidopsis thaliana
gi|3033388|gb|AAC12832.1| hypothetical protein
[Arabidopsis thaliana]
Length = 785
Score = 85.1 bits (209), Expect = 5e-16
Identities = 40/107 (37%), Positives = 59/107 (54%)
Frame = -1
Query: 550 MNHMQRMLEXCMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCV 371
M+ ++ ++ C+D+ LQ+SV E + K CCV
Sbjct: 700 MSELRDSVKTCLDVNASLQKSVHLE--------------------------NPFKRKCCV 733
Query: 370 CCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAY 230
C ++ +++LLYRCGHMCTC +CANEL GGKCP+C A I++VVR +
Sbjct: 734 CNETQVETLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 780
>ref|NP_174371.1| hypothetical protein; protein id: At1g30860.1 [Arabidopsis
thaliana] gi|25403371|pir||E86434 protein F17F8.27
[imported] - Arabidopsis thaliana
gi|4926833|gb|AAD32943.1|AC004135_18 T17H7.18
[Arabidopsis thaliana]
gi|9755386|gb|AAF98193.1|AC000107_16 F17F8.27
[Arabidopsis thaliana]
Length = 739
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Frame = -1
Query: 508 QLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVK------KGTCCVCCDSHIDS 347
++EL +R ++ + SV D + H K CCVC ++ +++
Sbjct: 636 EMELISGMRSQIQQLQQEMSVLRDSVKTCLDANASLQHKAHQENPMKRKCCVCDETQVEA 695
Query: 346 LLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVR 236
+LYRCGHMC C KCANEL GGKCP+CRA IV+VVR
Sbjct: 696 VLYRCGHMCMCLKCANELHWSGGKCPICRAQIVDVVR 732
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,428,386
Number of Sequences: 1393205
Number of extensions: 9918830
Number of successful extensions: 32130
Number of sequences better than 10.0: 665
Number of HSP's better than 10.0 without gapping: 30648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31859
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
