Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005822A_C01 KMC005822A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41892.1| unknown protein [Arabidopsis thaliana] 75 4e-13
ref|NP_198037.1| putative protein; protein id: At5g26850.1 [Arab... 50 1e-05
ref|NP_563755.1| expressed protein; protein id: At1g05960.1, sup... 47 2e-04
pir||F86194 hypothetical protein [imported] - Arabidopsis thalia... 45 7e-04
ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [... 35 0.70
>dbj|BAC41892.1| unknown protein [Arabidopsis thaliana]
Length = 970
Score = 75.5 bits (184), Expect = 4e-13
Identities = 43/94 (45%), Positives = 58/94 (60%)
Frame = -3
Query: 523 TTPLPYNTMASQCESLGTCARKKLSNWLAYENHHTPTPDRLFLAIADHRNSALEKVANDD 344
T+PLPY+TM ++CE+ GT R+KLS WLA EN + +SALEKV +D
Sbjct: 879 TSPLPYDTMTNRCETFGTGTREKLSRWLATENRQM----NGLYGNSLEESSALEKVV-ED 933
Query: 343 GYAPNPVAALPRDPRLAVKLPPASPFDHFLKAAG 242
G + + +D ++LPPASPFD+FLKAAG
Sbjct: 934 GNIYGRESGMLQDSWSMMRLPPASPFDNFLKAAG 967
>ref|NP_198037.1| putative protein; protein id: At5g26850.1 [Arabidopsis thaliana]
gi|7485250|pir||T01764 hypothetical protein A_IG002P16.24
- Arabidopsis thaliana gi|2191175|gb|AAB61061.1|
Hypothetical protein F2P16.24 [Arabidopsis thaliana]
Length = 907
Score = 50.4 bits (119), Expect = 1e-05
Identities = 27/58 (46%), Positives = 35/58 (59%)
Frame = -3
Query: 523 TTPLPYNTMASQCESLGTCARKKLSNWLAYENHHTPTPDRLFLAIADHRNSALEKVAN 350
T+PLPY+TM ++CE+ GT R+KLS WLA EN + +SALEKV N
Sbjct: 853 TSPLPYDTMTNRCETFGTGTREKLSRWLATENRQM----NGLYGNSLEESSALEKVRN 906
>ref|NP_563755.1| expressed protein; protein id: At1g05960.1, supported by cDNA:
gi_14194168 [Arabidopsis thaliana]
Length = 982
Score = 46.6 bits (109), Expect = 2e-04
Identities = 34/110 (30%), Positives = 51/110 (45%), Gaps = 17/110 (15%)
Frame = -3
Query: 517 PLPYNTMASQCESLGTCARKKLSNWLAYENHHTPTPDRLFLAIADHRNSA--------LE 362
P+PY+ M +QCE+L T ++K+S +++ T AI N E
Sbjct: 880 PVPYDQMMNQCEALVTGKQQKMSVLRSFKPQATK-------AITSEDNEKDEQYLLKETE 932
Query: 361 KVANDDGYAPNPVAALPRD---------PRLAVKLPPASPFDHFLKAAGC 239
+ DD A P+ P+ + +LPP+SP+D FLKAAGC
Sbjct: 933 EAGEDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC 982
>pir||F86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810459|gb|AAF80120.1|AC024174_2 Contains similarity
to an unknown protein T11A7.7 gi|2335096 from Arabidopsis
thaliana BAC T11A7 gb|AC002339 and contains a tropomyosin
PF|00261 domain. ESTs gb|AI995205, gb|N37925, gb|F13889,
gb|AV523107, gb|AV535948, gb|AV558461, gb|F13888 come
from this gene
Length = 1628
Score = 44.7 bits (104), Expect = 7e-04
Identities = 37/131 (28%), Positives = 59/131 (44%), Gaps = 17/131 (12%)
Frame = -3
Query: 517 PLPYNTMASQCESLGTCARKKLSNWLAYENHHTPTPDRLFLAIADHRNSA--------LE 362
P+PY+ M +QCE+L T ++K+S +++ T AI N E
Sbjct: 887 PVPYDQMMNQCEALVTGKQQKMSVLRSFKPQATK-------AITSEDNEKDEQYLLKETE 939
Query: 361 KVANDDGYAPNPVAALPRD---------PRLAVKLPPASPFDHFLKAAGC***IRCLMLT 209
+ DD A P+ P+ + +LPP+SP+D FLKAAG C +
Sbjct: 940 EAGEDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGV---KNCGRVW 996
Query: 208 SSMLICVSL*C 176
S ++C+ + C
Sbjct: 997 SVNVLCLEVDC 1007
>ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [Arabidopsis thaliana]
gi|25408758|pir||F84846 hypothetical protein At2g41830
[imported] - Arabidopsis thaliana
gi|2335096|gb|AAC02765.1| hypothetical protein
[Arabidopsis thaliana]
Length = 961
Score = 34.7 bits (78), Expect = 0.70
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -3
Query: 322 AALPRDPRLAVKLPPASPFDHFLKAAGC 239
A L +P+ A +LP +SP+D+FLKAAGC
Sbjct: 935 AELQNNPQ-AFRLPASSPYDNFLKAAGC 961
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,950,799
Number of Sequences: 1393205
Number of extensions: 9693701
Number of successful extensions: 25252
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25231
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
