Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005795A_C01 KMC005795A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL86349.1| unknown protein [Arabidopsis thaliana] 189 2e-47
ref|NP_187941.1| hypothetical protein; protein id: At3g13330.1 [... 189 2e-47
dbj|BAB02802.1| contains similarity to unknown protein~gb|AAF509... 189 2e-47
ref|XP_223766.1| similar to TEMO [Rattus norvegicus] 85 4e-16
gb|AAH43602.1| Similar to expressed sequence AA409398 [Homo sapi... 85 4e-16
>gb|AAL86349.1| unknown protein [Arabidopsis thaliana]
Length = 180
Score = 189 bits (480), Expect = 2e-47
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = -1
Query: 519 DFRDRAYLEANSVHRRRKLRNASSGPSVASVHGAVLALAASVLSAPYDMPSWLPEHITLL 340
DFRDR+Y EANS+ +RR R +SS S+A VHGAVL L ASVLS PYDMPSWLPEH+TLL
Sbjct: 66 DFRDRSYAEANSIQKRRNRRKSSSTQSIAGVHGAVLGLVASVLSVPYDMPSWLPEHVTLL 125
Query: 339 ARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEEPLEILADTSSSSSYFA 175
ARF+GEP+P+KSTVTKAVAEFRRTHADTWN+QK+ FTE+ LEILADTSSSSSYFA
Sbjct: 126 ARFAGEPTPIKSTVTKAVAEFRRTHADTWNIQKDSFTEDQLEILADTSSSSSYFA 180
>ref|NP_187941.1| hypothetical protein; protein id: At3g13330.1 [Arabidopsis thaliana]
Length = 1709
Score = 189 bits (480), Expect = 2e-47
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = -1
Query: 519 DFRDRAYLEANSVHRRRKLRNASSGPSVASVHGAVLALAASVLSAPYDMPSWLPEHITLL 340
DFRDR+Y EANS+ +RR R +SS S+A VHGAVL L ASVLS PYDMPSWLPEH+TLL
Sbjct: 1595 DFRDRSYAEANSIQKRRNRRKSSSTQSIAGVHGAVLGLVASVLSVPYDMPSWLPEHVTLL 1654
Query: 339 ARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEEPLEILADTSSSSSYFA 175
ARF+GEP+P+KSTVTKAVAEFRRTHADTWN+QK+ FTE+ LEILADTSSSSSYFA
Sbjct: 1655 ARFAGEPTPIKSTVTKAVAEFRRTHADTWNIQKDSFTEDQLEILADTSSSSSYFA 1709
>dbj|BAB02802.1| contains similarity to unknown protein~gb|AAF50915.1~gene_id:MDC11.16
[Arabidopsis thaliana]
Length = 1716
Score = 189 bits (480), Expect = 2e-47
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = -1
Query: 519 DFRDRAYLEANSVHRRRKLRNASSGPSVASVHGAVLALAASVLSAPYDMPSWLPEHITLL 340
DFRDR+Y EANS+ +RR R +SS S+A VHGAVL L ASVLS PYDMPSWLPEH+TLL
Sbjct: 1602 DFRDRSYAEANSIQKRRNRRKSSSTQSIAGVHGAVLGLVASVLSVPYDMPSWLPEHVTLL 1661
Query: 339 ARFSGEPSPVKSTVTKAVAEFRRTHADTWNVQKELFTEEPLEILADTSSSSSYFA 175
ARF+GEP+P+KSTVTKAVAEFRRTHADTWN+QK+ FTE+ LEILADTSSSSSYFA
Sbjct: 1662 ARFAGEPTPIKSTVTKAVAEFRRTHADTWNIQKDSFTEDQLEILADTSSSSSYFA 1716
>ref|XP_223766.1| similar to TEMO [Rattus norvegicus]
Length = 163
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/106 (38%), Positives = 62/106 (57%), Gaps = 5/106 (4%)
Frame = -1
Query: 477 RRRKLRNASSGPSVASV-----HGAVLALAASVLSAPYDMPSWLPEHITLLARFSGEPSP 313
++RK S G ++ S H VL L A VLS+PYD+P+W+P+ + L+ +P P
Sbjct: 58 KKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQP 117
Query: 312 VKSTVTKAVAEFRRTHADTWNVQKELFTEEPLEILADTSSSSSYFA 175
++ TV K ++ FRRTH D W K+ FT++ L +L D S Y+A
Sbjct: 118 IEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 163
>gb|AAH43602.1| Similar to expressed sequence AA409398 [Homo sapiens]
Length = 459
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/106 (38%), Positives = 62/106 (57%), Gaps = 5/106 (4%)
Frame = -1
Query: 477 RRRKLRNASSGPSVASV-----HGAVLALAASVLSAPYDMPSWLPEHITLLARFSGEPSP 313
++RK S G ++ S H VL L A VLS+PYD+P+W+P+ + L+ +P P
Sbjct: 354 KKRKRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQP 413
Query: 312 VKSTVTKAVAEFRRTHADTWNVQKELFTEEPLEILADTSSSSSYFA 175
++ TV K ++ FRRTH D W K+ FT++ L +L D S Y+A
Sbjct: 414 IEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,809,487
Number of Sequences: 1393205
Number of extensions: 9673270
Number of successful extensions: 51869
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51853
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
