Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005785A_C01 KMC005785A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T48080 translation releasing factor RF-1-like protein - Ara... 125 2e-28
ref|NP_191850.2| translation releasing factor RF-1 -like protein... 125 2e-28
ref|ZP_00074156.1| hypothetical protein [Trichodesmium erythraeu... 108 2e-23
ref|NP_488225.1| translation releasing factor RF-1 [Nostoc sp. P... 100 9e-21
ref|NP_443014.1| peptide chain release factor [Synechocystis sp.... 100 2e-20
>pir||T48080 translation releasing factor RF-1-like protein - Arabidopsis
thaliana gi|7573420|emb|CAB87736.1| translation
releasing factor RF-1-like protein [Arabidopsis
thaliana]
Length = 419
Score = 125 bits (315), Expect = 2e-28
Identities = 59/82 (71%), Positives = 72/82 (86%)
Frame = -1
Query: 495 LREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFFDGDIENAVQS 316
+REQQE IRNERKSQ+GTGAR+EKIRTYNYKD+RVTDHRLKMNF LT+F DG +E+AVQ+
Sbjct: 335 VREQQEKIRNERKSQVGTGARSEKIRTYNYKDSRVTDHRLKMNFALTTFLDGALEDAVQA 394
Query: 315 CVTTEQKQLLEELAESANAPAS 250
C EQK+L+EEL+ES A ++
Sbjct: 395 CAALEQKELMEELSESVAASSA 416
>ref|NP_191850.2| translation releasing factor RF-1 -like protein; protein id:
At3g62910.1, supported by cDNA: gi_19699095 [Arabidopsis
thaliana] gi|19699096|gb|AAL90914.1| AT3g62910/T20O10_10
[Arabidopsis thaliana] gi|21928033|gb|AAM78045.1|
AT3g62910/T20O10_10 [Arabidopsis thaliana]
Length = 422
Score = 125 bits (315), Expect = 2e-28
Identities = 59/82 (71%), Positives = 72/82 (86%)
Frame = -1
Query: 495 LREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFFDGDIENAVQS 316
+REQQE IRNERKSQ+GTGAR+EKIRTYNYKD+RVTDHRLKMNF LT+F DG +E+AVQ+
Sbjct: 338 VREQQEKIRNERKSQVGTGARSEKIRTYNYKDSRVTDHRLKMNFALTTFLDGALEDAVQA 397
Query: 315 CVTTEQKQLLEELAESANAPAS 250
C EQK+L+EEL+ES A ++
Sbjct: 398 CAALEQKELMEELSESVAASSA 419
>ref|ZP_00074156.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 369
Score = 108 bits (271), Expect = 2e-23
Identities = 48/82 (58%), Positives = 65/82 (78%)
Frame = -1
Query: 495 LREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFFDGDIENAVQS 316
L+EQQ + + R+SQ+GTG+R+EKIRTYNYKDNRVTDHRL NF L +GDIEN +Q+
Sbjct: 287 LQEQQAEVSSIRRSQVGTGSRSEKIRTYNYKDNRVTDHRLNQNFSLVPLLEGDIENVIQA 346
Query: 315 CVTTEQKQLLEELAESANAPAS 250
C+T +Q++ L+ELA S++ P S
Sbjct: 347 CITQDQQERLQELAASSSTPIS 368
>ref|NP_488225.1| translation releasing factor RF-1 [Nostoc sp. PCC 7120]
gi|20139331|sp|Q8YPK9|RF1_ANASP Peptide chain release
factor 1 (RF-1) gi|25299699|pir||AB2329 translation
releasing factor RF-1 [imported] - Nostoc sp. (strain
PCC 7120) gi|17133320|dbj|BAB75884.1| translation
releasing factor RF-1 [Nostoc sp. PCC 7120]
Length = 366
Score = 100 bits (249), Expect = 9e-21
Identities = 45/79 (56%), Positives = 61/79 (76%)
Frame = -1
Query: 495 LREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFFDGDIENAVQS 316
LREQQE + + R+SQ+GTG+R+EKIRTYNYKD+R TDHRL NF L +GD+E +QS
Sbjct: 287 LREQQEEVTSMRRSQVGTGSRSEKIRTYNYKDSRATDHRLGQNFSLNPVLEGDLETVIQS 346
Query: 315 CVTTEQKQLLEELAESANA 259
C++ +Q++ L ELA S+ A
Sbjct: 347 CISQDQQERLAELATSSAA 365
>ref|NP_443014.1| peptide chain release factor [Synechocystis sp. PCC 6803]
gi|2500139|sp|P74707|RF1_SYNY3 Peptide chain release
factor 1 (RF-1) gi|7428981|pir||S76914 translation
releasing factor RF-1 - Synechocystis sp. (strain PCC
6803) gi|1653916|dbj|BAA18826.1| peptide chain release
factor [Synechocystis sp. PCC 6803]
Length = 365
Score = 99.8 bits (247), Expect = 2e-20
Identities = 43/78 (55%), Positives = 63/78 (80%)
Frame = -1
Query: 495 LREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFFDGDIENAVQS 316
L+EQ ++I + R+SQ+GTG+R+EKIRTYNYKDNRVTDHRL NF+L + +G+I ++S
Sbjct: 287 LQEQNDAISSNRRSQVGTGSRSEKIRTYNYKDNRVTDHRLGRNFDLNTALEGEIHTIIES 346
Query: 315 CVTTEQKQLLEELAESAN 262
C++ +Q++ L ELAE+ N
Sbjct: 347 CISQDQQERLAELAEATN 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,070,880
Number of Sequences: 1393205
Number of extensions: 7860696
Number of successful extensions: 18796
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 18109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18782
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
