Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005783A_C01 KMC005783A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65960.1| unknown [Arabidopsis thaliana] 139 2e-32
ref|NP_199752.1| putative protein; protein id: At5g49410.1, supp... 139 2e-32
ref|NP_565076.1| expressed protein; protein id: At1g73940.1, sup... 91 1e-17
gb|AAO20079.1| unknown protein [Oryza sativa (japonica cultivar-... 72 3e-12
gb|ZP_00022156.1| hypothetical protein [Ralstonia metallidurans] 32 6.8
>gb|AAM65960.1| unknown [Arabidopsis thaliana]
Length = 139
Score = 139 bits (350), Expect = 2e-32
Identities = 60/87 (68%), Positives = 72/87 (81%)
Frame = -3
Query: 553 PPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKSKNHMKIVLRWMRERQKLRL 374
PPEQ TITRV+FDI+K+HGP+++ TW+RVKEVGL+ L SK HMKI+LRWMRERQKL+L
Sbjct: 34 PPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGLTSKRHMKIILRWMRERQKLKL 93
Query: 373 VCNHVGAHKQFLYTTWFTNPGTAQATP 293
+CNHVG HKQFLYTTWFT + P
Sbjct: 94 ICNHVGPHKQFLYTTWFTKHNPSSKFP 120
>ref|NP_199752.1| putative protein; protein id: At5g49410.1, supported by cDNA: 6602.
[Arabidopsis thaliana] gi|9759424|dbj|BAB09911.1|
gb|AAF36742.1~gene_id:K7J8.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 145
Score = 139 bits (350), Expect = 2e-32
Identities = 60/87 (68%), Positives = 72/87 (81%)
Frame = -3
Query: 553 PPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKSKNHMKIVLRWMRERQKLRL 374
PPEQ TITRV+FDI+K+HGP+++ TW+RVKEVGL+ L SK HMKI+LRWMRERQKL+L
Sbjct: 40 PPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGLTSKRHMKIILRWMRERQKLKL 99
Query: 373 VCNHVGAHKQFLYTTWFTNPGTAQATP 293
+CNHVG HKQFLYTTWFT + P
Sbjct: 100 ICNHVGPHKQFLYTTWFTKHNPSSKFP 126
>ref|NP_565076.1| expressed protein; protein id: At1g73940.1, supported by cDNA:
32565., supported by cDNA: gi_16323092 [Arabidopsis
thaliana] gi|25406307|pir||A96767 unknown protein
F2P9.19 [imported] - Arabidopsis thaliana
gi|12325135|gb|AAG52511.1|AC016662_5 unknown protein;
73656-74659 [Arabidopsis thaliana]
gi|16323093|gb|AAL15281.1| At1g73940/F2P9_19
[Arabidopsis thaliana] gi|21360419|gb|AAM47325.1|
At1g73940/F2P9_19 [Arabidopsis thaliana]
gi|21592788|gb|AAM64737.1| unknown [Arabidopsis
thaliana]
Length = 151
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/97 (41%), Positives = 64/97 (65%)
Frame = -3
Query: 553 PPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKSKNHMKIVLRWMRERQKLRL 374
P ++ I+ L+D+ K HGP+SVPNTW R +E G+ L SK HMK++L+WMR ++ L+L
Sbjct: 50 PIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSGLNSKTHMKLLLKWMRGKKMLKL 109
Query: 373 VCNHVGAHKQFLYTTWFTNPGTAQATPGGSVPSKQKS 263
+CN VG+ K+F +T +P Q P + +K+++
Sbjct: 110 ICNQVGSSKKFFHTVLPEDP--LQEQPAAPIENKKQA 144
>gb|AAO20079.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 158
Score = 72.4 bits (176), Expect = 3e-12
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = -3
Query: 553 PPEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLKDLKSKNHMKIVLRWMRERQKLRL 374
P E+ I+ L I +HGP++V NTW K+ G+ L SK HMKI+L+WM R+ ++L
Sbjct: 44 PKEEAVAISGRLLQIFTDHGPLTVGNTWNHAKDAGISGLNSKTHMKILLKWMTGRRIVKL 103
Query: 373 VCNHVGAHKQFLYTTW 326
C G K+FLY+ +
Sbjct: 104 NCVGTGNSKKFLYSPY 119
>gb|ZP_00022156.1| hypothetical protein [Ralstonia metallidurans]
Length = 428
Score = 31.6 bits (70), Expect = 6.8
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 13/67 (19%)
Frame = -1
Query: 231 TKRMDVLFITMRRIM-WTVIIFFSYL*KI*LLAMF------------LYGWMTYIFLH*Y 91
T RM F + RI+ WT+ I FS L L+ +F L+GW+TYI + +
Sbjct: 197 TGRMIERFTPLERIVHWTMAISFSILAISGLVILFGKHVLLPIFGHTLFGWLTYILKNLH 256
Query: 90 VASAPMF 70
S P+F
Sbjct: 257 NLSGPVF 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,074,655
Number of Sequences: 1393205
Number of extensions: 10484447
Number of successful extensions: 30339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30329
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
