Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005782A_C01 KMC005782A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [A... 181 7e-45
ref|NP_565131.1| oxygen-evolving complex-23 related protein; pro... 180 1e-44
pir||C96792 unknown protein F14G6.5 [imported] - Arabidopsis tha... 180 1e-44
ref|XP_127166.3| similar to Cdc42-binding protein kinase beta [R... 34 1.4
dbj|BAC65833.1| mKIAA1757 protein [Mus musculus] 34 1.4
>gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis
thaliana]
Length = 247
Score = 181 bits (458), Expect = 7e-45
Identities = 83/108 (76%), Positives = 99/108 (90%)
Frame = -1
Query: 563 GPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQNPGES 384
GPDFT+MESFGKV+ FAETLVSGLDRSW+KP GV AKLI+S++SKG YYIEY+LQNPGE+
Sbjct: 140 GPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEA 199
Query: 383 RRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI 240
R+HLYSAIGMATNGWYNRLYTVTGQ+ +EE+ + +S+IQK V SF+FI
Sbjct: 200 RKHLYSAIGMATNGWYNRLYTVTGQFTDEESSEQSSKIQKTVKSFRFI 247
>ref|NP_565131.1| oxygen-evolving complex-23 related protein; protein id:
At1g76450.1, supported by cDNA: 123862. [Arabidopsis
thaliana] gi|18203439|sp|Q9S720|THL1_ARATH Unknown
thylakoid lumen protein, chloroplast precursor
Length = 247
Score = 180 bits (456), Expect = 1e-44
Identities = 83/108 (76%), Positives = 99/108 (90%)
Frame = -1
Query: 563 GPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQNPGES 384
GPDFT+MESFGKV+ FAETLVSGLDRSW+KP GV AKLI+S++SKG YYIEY+LQNPGE+
Sbjct: 140 GPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEA 199
Query: 383 RRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI 240
R+HLYSAIGMATNGWYNRLYTVTGQ+ +EE+ + +S+IQK V SF+FI
Sbjct: 200 RKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 247
>pir||C96792 unknown protein F14G6.5 [imported] - Arabidopsis thaliana
gi|6554474|gb|AAF16656.1|AC012394_5 unknown protein;
20843-19352 [Arabidopsis thaliana]
gi|12323974|gb|AAG51945.1|AC015450_6 unknown protein;
20920-22411 [Arabidopsis thaliana]
Length = 220
Score = 180 bits (456), Expect = 1e-44
Identities = 83/108 (76%), Positives = 99/108 (90%)
Frame = -1
Query: 563 GPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQNPGES 384
GPDFT+MESFGKV+ FAETLVSGLDRSW+KP GV AKLI+S++SKG YYIEY+LQNPGE+
Sbjct: 113 GPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEA 172
Query: 383 RRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI 240
R+HLYSAIGMATNGWYNRLYTVTGQ+ +EE+ + +S+IQK V SF+FI
Sbjct: 173 RKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 220
>ref|XP_127166.3| similar to Cdc42-binding protein kinase beta [Rattus norvegicus]
[Mus musculus]
Length = 1463
Score = 33.9 bits (76), Expect = 1.4
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 259 SHHLSSYKEMLMMKEKFPHSHLS-YINTDLCLPTV*DSYEQERILIF 122
SH L+ KE+LM+K+K S + + + TV D YE+ER ++F
Sbjct: 474 SHQLALQKEVLMLKDKLEKSKRERHSEMEEAIGTVKDKYERERAMLF 520
>dbj|BAC65833.1| mKIAA1757 protein [Mus musculus]
Length = 1450
Score = 33.9 bits (76), Expect = 1.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 350 TNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI*RNAHDEGEISPQPSFL 189
T GW NR+ T QY E T++Y++++Q A+ ++ H E +P+ L
Sbjct: 212 TEGWENRIRLWTDQYEEAFTNQYSADVQNALE------QHLHSNKEFVGKPAIL 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,509,690
Number of Sequences: 1393205
Number of extensions: 10349116
Number of successful extensions: 30343
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30336
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
