Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005781A_C01 KMC005781A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181336.1| unknown protein; protein id: At2g38000.1, suppo... 160 6e-39
ref|NP_057015.1| fls485 [Homo sapiens] gi|11287305|pir||T44500 f... 44 0.001
ref|XP_144999.1| RIKEN cDNA D630042P16 gene [Mus musculus] 43 0.002
ref|NP_178139.1| hypothetical protein; protein id: At1g80220.1 [... 33 1.9
gb|EAA12373.1| agCP10907 [Anopheles gambiae str. PEST] 31 7.2
>ref|NP_181336.1| unknown protein; protein id: At2g38000.1, supported by cDNA:
gi_19424072, supported by cDNA: gi_21281102 [Arabidopsis
thaliana] gi|25408585|pir||G84799 hypothetical protein
At2g38000 [imported] - Arabidopsis thaliana
gi|19424073|gb|AAL87350.1| unknown protein [Arabidopsis
thaliana] gi|21281103|gb|AAM45095.1| unknown protein
[Arabidopsis thaliana]
Length = 419
Score = 160 bits (406), Expect = 6e-39
Identities = 69/96 (71%), Positives = 85/96 (87%)
Frame = -3
Query: 509 NTQAYQCTPAFFADSFFLNKFFFEVIAERAQVPTPARIICERHTISVVPVTRVTMAHCRQ 330
NTQAYQCTPA+FADS+FLN+F EVI+ RA+VP A ++CERHTISVVPVTRVTM +
Sbjct: 324 NTQAYQCTPAYFADSYFLNRFSSEVISLRAEVPPTANVVCERHTISVVPVTRVTMEDRGK 383
Query: 329 SFSFYIIGYSREVYLKDYYPSKYCWGLCPCLEWLKL 222
+FSFYIIG+ +E+YLKDYYP+++CWGLCPCLEWLK+
Sbjct: 384 AFSFYIIGFGKEIYLKDYYPARFCWGLCPCLEWLKV 419
>ref|NP_057015.1| fls485 [Homo sapiens] gi|11287305|pir||T44500 fls485 protein
[imported] - human gi|4589931|dbj|BAA76932.1| fls485
[Homo sapiens]
Length = 353
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = -3
Query: 434 IAER-AQVPTPARIICERHTISVVPVTRVTMAHCRQSFSFYIIGYSREVYLKDYYPSKYC 258
IAE A + + AR++ +R TI ++P+T V + +++ +YI G +VY D YP +YC
Sbjct: 289 IAEHSAALASRARVLQQRQTIELIPLTEVHYWYQGKTYVYYIYGTDHQVYAVD-YPERYC 347
Query: 257 WG 252
G
Sbjct: 348 CG 349
>ref|XP_144999.1| RIKEN cDNA D630042P16 gene [Mus musculus]
Length = 438
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = -3
Query: 404 ARIICERHTISVVPVTRVTMAHCRQSFSFYIIGYSREVYLKDYYPSKYCWG 252
ARI+ +R TI ++P+T V + ++ +YI G +VY+ D YP +YC G
Sbjct: 385 ARILQQRQTIELIPITEVHYWYQGKTSVYYIYGTDHQVYVAD-YPERYCCG 434
>ref|NP_178139.1| hypothetical protein; protein id: At1g80220.1 [Arabidopsis
thaliana]
Length = 255
Score = 33.1 bits (74), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (50%)
Frame = +2
Query: 173 HVHLPNAARMEFFSNIITSTTPNMDTSPSNI*RGNNPLNTPPCYI 307
H LPN + F + T N+D PSN+ G P+N PP ++
Sbjct: 195 HHQLPNNHHLPMFQVGFSGTMQNLD-GPSNVSNGFGPVNYPPVFV 238
>gb|EAA12373.1| agCP10907 [Anopheles gambiae str. PEST]
Length = 592
Score = 31.2 bits (69), Expect = 7.2
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Frame = -3
Query: 452 KFFFEVIAERAQVPTPARIICE-RHTISVVPVTRVTMAHCRQSFSFYIIGYSREVYLK 282
K+ + + E Q+P P RH ++ +PV + +A+ +S++FY++ + YLK
Sbjct: 273 KYIEKSLGESVQLPMPTIATTPWRHFLTSMPVYAIIVANFCRSWNFYLLVLYQSAYLK 330
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,306,519
Number of Sequences: 1393205
Number of extensions: 10143377
Number of successful extensions: 24934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24931
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
