Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005780A_C01 KMC005780A_c01
(208 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84593 hypothetical protein At2g20830 [imported] - Arabidop... 37 0.10
ref|NP_565488.1| expressed protein; protein id: At2g20830.1, sup... 37 0.10
dbj|BAA83349.1| Similar to Arabidopsis thaliana chromosome II BA... 36 0.13
dbj|BAC24839.1| OSJNBa0038F22.18 [Oryza sativa (japonica cultiva... 36 0.13
dbj|BAC22215.1| hypothetical protein~similar to Oryza sativa chr... 36 0.13
>pir||H84593 hypothetical protein At2g20830 [imported] - Arabidopsis thaliana
Length = 404
Score = 36.6 bits (83), Expect = 0.10
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -2
Query: 207 VQNRVKMLAAQEGLDVKKGYFIAFSPEMILEKYKNLV 97
VQ ++ L +EGL V KGY+ ++P+ I+E+Y +L+
Sbjct: 365 VQGLIERLGREEGLLVGKGYYTDYTPDQIVERYMDLL 401
>ref|NP_565488.1| expressed protein; protein id: At2g20830.1, supported by cDNA:
gi_13430685 [Arabidopsis thaliana]
gi|13430686|gb|AAK25965.1|AF360255_1 unknown protein
[Arabidopsis thaliana] gi|14532890|gb|AAK64127.1|
unknown protein [Arabidopsis thaliana]
gi|20197692|gb|AAD20912.2| expressed protein
[Arabidopsis thaliana]
Length = 297
Score = 36.6 bits (83), Expect = 0.10
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -2
Query: 207 VQNRVKMLAAQEGLDVKKGYFIAFSPEMILEKYKNLV 97
VQ ++ L +EGL V KGY+ ++P+ I+E+Y +L+
Sbjct: 258 VQGLIERLGREEGLLVGKGYYTDYTPDQIVERYMDLL 294
>dbj|BAA83349.1| Similar to Arabidopsis thaliana chromosome II BAC F5H14 genomic
sequence; unknown protein (AC006234) [Oryza sativa
(japonica cultivar-group)]
Length = 303
Score = 36.2 bits (82), Expect = 0.13
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2
Query: 207 VQNRVKMLAAQEGLDVKKGYFIAFSPEMILEKY 109
VQ V+ LAA EGL V KGYF FS + I++ Y
Sbjct: 262 VQGMVERLAAGEGLSVGKGYFTDFSQDKIVDLY 294
>dbj|BAC24839.1| OSJNBa0038F22.18 [Oryza sativa (japonica cultivar-group)]
Length = 515
Score = 36.2 bits (82), Expect = 0.13
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2
Query: 207 VQNRVKMLAAQEGLDVKKGYFIAFSPEMILEKY 109
VQ V+ LAA EGL V KGYF FS + I++ Y
Sbjct: 474 VQGMVERLAAGEGLSVGKGYFTDFSQDKIVDLY 506
>dbj|BAC22215.1| hypothetical protein~similar to Oryza sativa chromosome 6, P0538C01
[Oryza sativa (japonica cultivar-group)]
Length = 208
Score = 36.2 bits (82), Expect = 0.13
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2
Query: 207 VQNRVKMLAAQEGLDVKKGYFIAFSPEMILEKY 109
VQ V+ LAA EGL V KGYF +S + I+E Y
Sbjct: 167 VQGMVERLAAGEGLSVGKGYFTDYSQDKIVELY 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,228,741
Number of Sequences: 1393205
Number of extensions: 2806989
Number of successful extensions: 6599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6599
length of database: 448,689,247
effective HSP length: 44
effective length of database: 387,388,227
effective search space used: 9297317448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
