Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005779A_C01 KMC005779A_c01
(393 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10209.1| putative extracellular dermal glycoprotein [Cice... 107 3e-23
ref|NP_197411.1| dermal glycoprotein precursor -like protein; pr... 84 4e-16
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 80 8e-15
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 79 1e-14
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 79 2e-14
>emb|CAC10209.1| putative extracellular dermal glycoprotein [Cicer arietinum]
Length = 369
Score = 107 bits (268), Expect = 3e-23
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = -3
Query: 391 IHGANSMVMVKKNVACLGFVDGGTIGTMSFVKASIVLGAHQLEENLLMFDLASNKFSFSS 212
I+G N MV VKKNVACLGFVDGGT MSF KASIV+G HQLE+NLL+FDL S+K SFSS
Sbjct: 300 IYGNNLMVNVKKNVACLGFVDGGTEPRMSFAKASIVIGGHQLEDNLLVFDLNSSKLSFSS 359
Query: 211 SLLLHNASCS 182
SLL+HNASCS
Sbjct: 360 SLLVHNASCS 369
>ref|NP_197411.1| dermal glycoprotein precursor -like protein; protein id:
At5g19100.1 [Arabidopsis thaliana]
Length = 391
Score = 84.0 bits (206), Expect = 4e-16
Identities = 43/70 (61%), Positives = 52/70 (73%)
Frame = -3
Query: 391 IHGANSMVMVKKNVACLGFVDGGTIGTMSFVKASIVLGAHQLEENLLMFDLASNKFSFSS 212
I+G+NS+V V KNV CLGFVDGG K IV+G Q+E+NL+ FDL ++KFSFSS
Sbjct: 320 IYGSNSLVKVNKNVVCLGFVDGGVKP-----KYPIVIGGFQMEDNLVEFDLEASKFSFSS 374
Query: 211 SLLLHNASCS 182
SLLLHN SCS
Sbjct: 375 SLLLHNTSCS 384
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 79.7 bits (195), Expect = 8e-15
Identities = 41/72 (56%), Positives = 50/72 (68%)
Frame = -3
Query: 391 IHGANSMVMVKKNVACLGFVDGGTIGTMSFVKASIVLGAHQLEENLLMFDLASNKFSFSS 212
I GANSMV V +V CLGFVDGG + S+V+G QLE+NL+ FDLASNKF FSS
Sbjct: 361 IFGANSMVSVSDDVICLGFVDGGVNA-----RTSVVIGGFQLEDNLIEFDLASNKFGFSS 415
Query: 211 SLLLHNASCSNF 176
+LL +C+NF
Sbjct: 416 TLLGRQTNCANF 427
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 79.0 bits (193), Expect = 1e-14
Identities = 42/72 (58%), Positives = 50/72 (69%)
Frame = -3
Query: 391 IHGANSMVMVKKNVACLGFVDGGTIGTMSFVKASIVLGAHQLEENLLMFDLASNKFSFSS 212
I GANSMV V +V CLGFVDGG AS+V+G QLE+NL+ FDLASNKF FSS
Sbjct: 362 IFGANSMVSVSDDVICLGFVDGGVNPG-----ASVVIGGFQLEDNLIEFDLASNKFGFSS 416
Query: 211 SLLLHNASCSNF 176
+LL +C+NF
Sbjct: 417 TLLGRQTNCANF 428
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 78.6 bits (192), Expect = 2e-14
Identities = 40/72 (55%), Positives = 50/72 (68%)
Frame = -3
Query: 391 IHGANSMVMVKKNVACLGFVDGGTIGTMSFVKASIVLGAHQLEENLLMFDLASNKFSFSS 212
I GANSMV V +V CLGFVDGG + S+V+G QLE+NL+ FDLASN+F FSS
Sbjct: 361 IFGANSMVSVSDDVICLGFVDGGVNA-----RTSVVIGGFQLEDNLIEFDLASNRFGFSS 415
Query: 211 SLLLHNASCSNF 176
+LL +C+NF
Sbjct: 416 TLLGRQTNCANF 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 323,053,619
Number of Sequences: 1393205
Number of extensions: 5964776
Number of successful extensions: 17311
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 16567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17256
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
