Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005777A_C01 KMC005777A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B84743 hypothetical protein At2g33250 [imported] - Arabidop... 50 2e-05
gb|AAL25561.1| F25I18.1/F25I18.1 [Arabidopsis thaliana] gi|20147... 50 2e-05
ref|NP_565763.2| expressed protein; protein id: At2g33255.1 [Ara... 50 2e-05
gb|AAD41539.1|AF029260_1 transcription factor RelB [Gallus gallus] 32 7.5
>pir||B84743 hypothetical protein At2g33250 [imported] - Arabidopsis thaliana
Length = 528
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = -1
Query: 660 CLLDQTGKYDSFPYANVGFKPDFKVTSLAEVYSILEANFDLS 535
CLLD+TG+Y ++ G +PDFKV SL+++ ++LE NFDL+
Sbjct: 486 CLLDETGRYGPDDFSVSGLQPDFKVDSLSKIQNLLETNFDLN 527
>gb|AAL25561.1| F25I18.1/F25I18.1 [Arabidopsis thaliana] gi|20147253|gb|AAM10340.1|
F25I18.1/F25I18.1 [Arabidopsis thaliana]
gi|20196845|gb|AAM14804.1| expressed protein
[Arabidopsis thaliana]
Length = 224
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = -1
Query: 660 CLLDQTGKYDSFPYANVGFKPDFKVTSLAEVYSILEANFDLS 535
CLLD+TG+Y ++ G +PDFKV SL+++ ++LE NFDL+
Sbjct: 182 CLLDETGRYGPDDFSVSGLQPDFKVDSLSKIQNLLETNFDLN 223
>ref|NP_565763.2| expressed protein; protein id: At2g33255.1 [Arabidopsis thaliana]
gi|20196855|gb|AAM14806.1| unknown protein [Arabidopsis
thaliana]
Length = 245
Score = 50.4 bits (119), Expect = 2e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = -1
Query: 660 CLLDQTGKYDSFPYANVGFKPDFKVTSLAEVYSILEANFDLS 535
CLLD+TG+Y ++ G +PDFKV SL+++ ++LE NFDL+
Sbjct: 203 CLLDETGRYGPDDFSVSGLQPDFKVDSLSKIQNLLETNFDLN 244
>gb|AAD41539.1|AF029260_1 transcription factor RelB [Gallus gallus]
Length = 549
Score = 32.0 bits (71), Expect = 7.5
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +2
Query: 380 PPTHKFSRIICFMT*QGARNKTTPRYKPPPNL 475
PPT + I T +G +T+PRY+PPP L
Sbjct: 507 PPTASWGPICSQGTSEGGGGRTSPRYRPPPPL 538
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,471,277
Number of Sequences: 1393205
Number of extensions: 11911576
Number of successful extensions: 23640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23638
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
