>KMC005776A_C01 KMC005776A_c01
ttatgtatatgtatatgtactggggaaaaagggaagacattgactcacctatttgttcac
ctttagaggggggaaaacacAAATTTCAACATGATTATCAGTTTTCAAAATTAACTGTAG
CCATGAACTTGATTTGTTAACCTTCCAAAACTGAAGCACATCTAGGGAAATAACAAAAAG
AATGAAAATTGAAAATCATACACTGTTCAAGCATGGGTCAGGGTGACTCACTCAAGCTTT
TCAACATTCTTGGACTGGACATGCTCTAAAGATCTAAAAACTGAAGTACATCTATGTTGG
CGGATAATCATGACAAGGATG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005776A_C01 KMC005776A_c01
         (321 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_229120.1| similar to RIKEN cDNA 1700001F22 [Mus musculus]...    33  1.3
emb|CAB82446.1| minor capsid protein VP23 [Ovine herpesvirus 1]        30  6.2

>ref|XP_229120.1| similar to RIKEN cDNA 1700001F22 [Mus musculus] [Rattus norvegicus]
          Length = 393

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 1   LCICICTGEKGKTLTHLFVHL*RGENTNFNMIIS 102
           L IC  TG++G+   H F HL +  N+ FNM  S
Sbjct: 321 LSICTATGKQGEKQMHQFCHLMKQNNSVFNMFSS 354

>emb|CAB82446.1| minor capsid protein VP23 [Ovine herpesvirus 1]
          Length = 148

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 192 SIFILFVISLDVLQFWKVNKSSSW-----LQLILKTDNHVEICVFPPL 64
           ++ +L  ++ D L   K+ K+ ++      Q     DNH+++CV PPL
Sbjct: 70  TLAVLEEVNADSLVLTKIQKNQAYQIKNIYQPFFHWDNHIQLCVIPPL 117

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,938,518
Number of Sequences: 1393205
Number of extensions: 4762515
Number of successful extensions: 8423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8423
length of database: 448,689,247
effective HSP length: 82
effective length of database: 334,446,437
effective search space used: 8026714488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MWM158g10_f AV767177 1 321 2 MWM235d07_f AV768314 89 223

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