Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005773A_C01 KMC005773A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB96818.1| elongation factor 1-alpha [Porphyra yezoensis] 270 2e-71
sp|P50256|EF1C_PORPU ELONGATION FACTOR 1-ALPHA C (EF-1-ALPHA) gi... 266 2e-70
sp|P16017|EF1A_CANAL ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|1... 225 4e-58
ref|NP_009676.1| translational elongation factor EF-1 alpha; Tef... 221 6e-57
sp|Q96WZ1|EF1A_COCIM Elongation factor 1-alpha (EF-1-alpha) gi|1... 220 1e-56
>dbj|BAB96818.1| elongation factor 1-alpha [Porphyra yezoensis]
Length = 449
Score = 270 bits (689), Expect = 2e-71
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = +3
Query: 3 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 182
CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK
Sbjct: 318 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 377
Query: 183 KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 362
KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE
Sbjct: 378 KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437
Query: 363 VEGKMTKSAAKK 398
VEGKMTKSAAKK
Sbjct: 438 VEGKMTKSAAKK 449
>sp|P50256|EF1C_PORPU ELONGATION FACTOR 1-ALPHA C (EF-1-ALPHA) gi|476155|gb|AAA61793.1|
EF1-alpha [Porphyra purpurea]
Length = 449
Score = 266 bits (680), Expect = 2e-70
Identities = 130/132 (98%), Positives = 131/132 (98%)
Frame = +3
Query: 3 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 182
CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK
Sbjct: 318 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 377
Query: 183 KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 362
KLED+PKMIKSGDAAMVKMVASKPMCVEAFT YPPLGRFAVRDMRQTVAVGVIKSVEKKE
Sbjct: 378 KLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKE 437
Query: 363 VEGKMTKSAAKK 398
VEGKMTKSAAKK
Sbjct: 438 VEGKMTKSAAKK 449
>sp|P16017|EF1A_CANAL ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|101974|pir||A35154
translation elongation factor eEF-1 alpha chain - yeast
(Candida albicans) gi|170857|gb|AAA34339.1| elongation
factor 1-alpha gi|170859|gb|AAA34340.1| elongation
factor 1-alpha
Length = 458
Score = 225 bits (573), Expect = 4e-58
Identities = 105/131 (80%), Positives = 118/131 (89%)
Frame = +3
Query: 3 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 182
CGDSKNDPPKGC SFNAQVI+LNHPG+I AGY+PVLDCHTAHIACKF L+ K+DRR+GK
Sbjct: 324 CGDSKNDPPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGK 383
Query: 183 KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 362
KLE+ PK +KSGDAA+VKMV +KPMCVEAFT YPPLGRFAVRDMRQTVAVGVIKSVEK +
Sbjct: 384 KLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443
Query: 363 VEGKMTKSAAK 395
GK+TK+A K
Sbjct: 444 KAGKVTKAAQK 454
>ref|NP_009676.1| translational elongation factor EF-1 alpha; Tef2p [Saccharomyces
cerevisiae] gi|6325337|ref|NP_015405.1| translational
elongation factor EF-1 alpha; Tef1p [Saccharomyces
cerevisiae] gi|119161|sp|P02994|EF1A_YEAST Elongation
factor 1-alpha (EF-1-alpha) gi|72873|pir||EFBY1A
translation elongation factor eEF-1 alpha-A chain,
cytosolic - yeast (Saccharomyces cerevisiae)
gi|9256877|pdb|1F60|A Chain A, Crystal Structure Of The
Yeast Elongation Factor Complex Eef1a:eef1ba
gi|12084705|pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In
Complex With Gdpnp gi|14277980|pdb|1IJE|A Chain A,
Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex gi|14277982|pdb|1IJF|A Chain A, Nucleotide
Exchange Mechanisms In The Eef1a-Eef1ba Complex
gi|3669|emb|CAA25356.1| EF-1-alpha [Saccharomyces
cerevisiae] gi|4607|emb|CAA25798.1| EF-1alpha
[Saccharomyces cerevisiae] gi|171432|gb|AAA34584.1|
EF-1-aplha gi|171434|gb|AAA34585.1| elongation factor
1-alpha gi|171436|gb|AAA34586.1| EF-1-alpha
gi|476072|emb|CAA55620.1| elongation factor EF-1-alpha
[Saccharomyces cerevisiae] gi|536396|emb|CAA85075.1| ORF
YBR118w [Saccharomyces cerevisiae]
gi|1230686|gb|AAB68129.1| Tef1p: Elongation factor
1-alpha [Saccharomyces cerevisiae]
Length = 458
Score = 221 bits (563), Expect = 6e-57
Identities = 104/131 (79%), Positives = 117/131 (88%)
Frame = +3
Query: 3 CGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGK 182
CGD+KNDPPKGCASFNA VI+LNHPG+I AGY+PVLDCHTAHIAC+F EL+ K DRRSGK
Sbjct: 324 CGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGK 383
Query: 183 KLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE 362
KLED PK +KSGDAA+VK V SKPMCVEAF++YPPLGRFAVRDMRQTVAVGVIKSV+K E
Sbjct: 384 KLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443
Query: 363 VEGKMTKSAAK 395
K+TK+A K
Sbjct: 444 KAAKVTKAAQK 454
>sp|Q96WZ1|EF1A_COCIM Elongation factor 1-alpha (EF-1-alpha)
gi|14150843|gb|AAK54650.1|AF378368_1 elongation factor
1-alpha [Coccidioides immitis]
Length = 460
Score = 220 bits (561), Expect = 1e-56
Identities = 107/131 (81%), Positives = 118/131 (89%), Gaps = 1/131 (0%)
Frame = +3
Query: 6 GDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKK 185
GDSKNDPPKGC SFNAQVI+LNHPG++ AGYAPVLDCHTAHIACKFSEL+ K+DRR+GK
Sbjct: 326 GDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKS 385
Query: 186 LEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKE- 362
+E+ PK IKSGDAA+VKMV SKPMCVEAFT YPPLGRFAVRDMRQTVAVGVIKSVEK E
Sbjct: 386 VENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEK 445
Query: 363 VEGKMTKSAAK 395
GK+TK+A K
Sbjct: 446 TGGKVTKAAQK 456
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,400,084
Number of Sequences: 1393205
Number of extensions: 17423896
Number of successful extensions: 79813
Number of sequences better than 10.0: 2470
Number of HSP's better than 10.0 without gapping: 66328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76352
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
