Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005772A_C01 KMC005772A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_249806.1| hypothetical protein [Pseudomonas aeruginosa PA... 35 0.60
gb|ZP_00004905.1| hypothetical protein [Rhodobacter sphaeroides] 33 1.7
dbj|BAB01489.1| AmiB [Dictyostelium discoideum] 32 3.9
ref|NP_223761.1| putative [Helicobacter pylori J99] gi|7464936|p... 32 3.9
gb|EAA09464.1| agCP15033 [Anopheles gambiae str. PEST] 32 3.9
>ref|NP_249806.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11349099|pir||D83507 hypothetical protein PA1115
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947033|gb|AAG04504.1|AE004541_9 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 774
Score = 35.0 bits (79), Expect = 0.60
Identities = 29/97 (29%), Positives = 43/97 (43%)
Frame = -2
Query: 436 LRSVAVVLGFWV*VVVIPL*SRCLVCWSGRISSTTDLLGGFLCFRILVDVSS*YASPPMA 257
L S +L +V+PL R + WS +DL G L +L S +A P M
Sbjct: 8 LSSCGSLLALAALFLVVPLAGRYWLGWSTPFGYLSDLALGSLLVLLLHRRSLWFALPVML 67
Query: 256 R*ALFLLGDEAFTASRSPTVTPSHFGRLVLDPWYIES 146
LFL+G+ A+ PS + +LDP ++ S
Sbjct: 68 LWCLFLIGNAELVAAVGRMPEPSDL-KYLLDPQFVSS 103
>gb|ZP_00004905.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 447
Score = 33.5 bits (75), Expect = 1.7
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -3
Query: 324 WVDFYAFVFWSMSHPDMHPLQWRDEHCFCWVMRLSLLLGPRQLLLLILV 178
++ F A +F + P + PL+W D ++LLLG R LLL LV
Sbjct: 394 YLRFVALIFRRVEAPALAPLRWSDRTLLALATGMTLLLGVRPDLLLDLV 442
>dbj|BAB01489.1| AmiB [Dictyostelium discoideum]
Length = 2678
Score = 32.3 bits (72), Expect = 3.9
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = +2
Query: 293 DQNTKA*KSTQEISRAANSAGPTYQTTRS*RNHNNLNPKSQNYCHRPQHHQPRS------ 454
+ NT A +T + +S PT T + N+NN +P S N + P RS
Sbjct: 214 NNNTTAAATTTTTTTNNSSNSPTSPTNNNNNNNNNNSPSSHNVVNSPPSTSSRSPPTVAS 273
Query: 455 -----ATVDPLTVILLKQDLHSTNRTLAKQP 532
+T+ P++ I+ +Q S N +QP
Sbjct: 274 VTSNTSTIQPISPIINRQ-TSSHNYQQPQQP 303
>ref|NP_223761.1| putative [Helicobacter pylori J99] gi|7464936|pir||F71856
hypothetical protein jhp1044 - Helicobacter pylori
(strain J99) gi|4155633|gb|AAD06622.1| putative
[Helicobacter pylori J99]
Length = 1154
Score = 32.3 bits (72), Expect = 3.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +3
Query: 378 HSGITTT*TQNPRTTATDL-------NTTSQDPPLLTP*QSFSSNKIFTQQTERLQS 527
HSG T TQ P T+ DL N T+ P L+P + ++ K+ ++E+LQS
Sbjct: 271 HSGATENLTQKPLTSQEDLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQS 327
>gb|EAA09464.1| agCP15033 [Anopheles gambiae str. PEST]
Length = 245
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = -2
Query: 160 WYIES-WSILYCLRFILQFVQVFIRCWVSIVLHGCTQAFDA*VILL 26
WYIE+ W+ L IL +++ I CWV T A+ A ++L+
Sbjct: 138 WYIETAWAFSTLLGLILFLLEIAILCWVKFYDLNTTAAWSACIVLI 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,336,242
Number of Sequences: 1393205
Number of extensions: 11866766
Number of successful extensions: 42857
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 39854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42683
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
