Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005770A_C02 KMC005770A_c02
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB44136.1| putative histone H2A [Oryza sativa (japonica cul... 268 5e-71
sp|P19177|H2A_PETCR Histone H2A gi|100161|pir||S11498 histone H2... 261 9e-69
gb|AAF65769.1|AF242311_1 histone H2A [Euphorbia esula] 258 6e-68
sp|P40280|H2A_MAIZE Histone H2A gi|7439704|pir||T02076 histone H... 257 1e-67
ref|NP_195876.1| putative protein; protein id: At5g02560.1, supp... 246 3e-64
>dbj|BAB44136.1| putative histone H2A [Oryza sativa (japonica cultivar-group)]
Length = 159
Score = 268 bits (685), Expect = 5e-71
Identities = 138/151 (91%), Positives = 142/151 (93%), Gaps = 3/151 (1%)
Frame = -2
Query: 618 GGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAV 439
GGK KKGA GRKAGGP+KK VSRSVKAGLQFPVGRIGRYLKKGRYAQR+GTGAPVYLAAV
Sbjct: 9 GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68
Query: 438 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPV 259
LEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPV
Sbjct: 69 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128
Query: 258 LLPKKTAEKAP---KESKSPPKKAGKSPKKA 175
LLPKKTAEKA KE+KSP K AGKSPKKA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159
>sp|P19177|H2A_PETCR Histone H2A gi|100161|pir||S11498 histone H2A - parsley
gi|20448|emb|CAA37828.1| H2A histone protein (AA 1 -
149) [Petroselinum crispum]
Length = 149
Score = 261 bits (666), Expect = 9e-69
Identities = 136/151 (90%), Positives = 141/151 (93%)
Frame = -2
Query: 627 MDTGGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 448
M+T GK+KKG GGRK GGP+KK V+RSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL
Sbjct: 1 METAGKAKKGFGGRK-GGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 59
Query: 447 AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 268
AAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNI
Sbjct: 60 AAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNI 119
Query: 267 NPVLLPKKTAEKAPKESKSPPKKAGKSPKKA 175
NPVLLPKKTAEKA KE KS P KAGKSPKKA
Sbjct: 120 NPVLLPKKTAEKAAKEPKS-PSKAGKSPKKA 149
>gb|AAF65769.1|AF242311_1 histone H2A [Euphorbia esula]
Length = 153
Score = 258 bits (659), Expect = 6e-68
Identities = 134/153 (87%), Positives = 138/153 (89%), Gaps = 2/153 (1%)
Frame = -2
Query: 627 MDTGGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 448
MDTG K KKGAG RK GGPKKKPVSRSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYL
Sbjct: 1 MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60
Query: 447 AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 268
AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61 AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
Query: 267 NPVLLPKKTAEKAPKESKSP--PKKAGKSPKKA 175
NPVLLPKK + A +K P P KA KSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153
>sp|P40280|H2A_MAIZE Histone H2A gi|7439704|pir||T02076 histone H2A - maize
gi|473603|gb|AAB04687.1| histone H2A
Length = 159
Score = 257 bits (656), Expect = 1e-67
Identities = 135/152 (88%), Positives = 138/152 (89%), Gaps = 4/152 (2%)
Frame = -2
Query: 618 GGKSKKGAGGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAV 439
GGK KKGA GRK GGP+KK VSRSVKAGLQFPVGRIGRYLKKGRYAQ VGTGAPVYLAAV
Sbjct: 9 GGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAV 68
Query: 438 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPV 259
LEYLAAEVLELAGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPV
Sbjct: 69 LEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPV 128
Query: 258 LLPKKTAEKA----PKESKSPPKKAGKSPKKA 175
LLPKKTAEKA KE+KS PKKA KSPKKA
Sbjct: 129 LLPKKTAEKASSGGSKEAKS-PKKAAKSPKKA 159
>ref|NP_195876.1| putative protein; protein id: At5g02560.1, supported by cDNA: 1553.
[Arabidopsis thaliana] gi|11275238|pir||T48277
hypothetical protein T22P11.150 - Arabidopsis thaliana
gi|7413645|emb|CAB85993.1| putative protein [Arabidopsis
thaliana] gi|21553646|gb|AAM62739.1| histone H2A
[Arabidopsis thaliana]
Length = 153
Score = 246 bits (627), Expect = 3e-64
Identities = 129/154 (83%), Positives = 140/154 (90%), Gaps = 3/154 (1%)
Frame = -2
Query: 627 MDTGGKSKKGAGGRKAGG-PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 451
MD+G K KKGA GR++GG PKKKPVSRSVK+GLQFPVGRIGRYLKKGRY++RVGTGAPVY
Sbjct: 1 MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60
Query: 450 LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 271
LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61 LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120
Query: 270 INPVLLPKKTAEKAPKESKSP--PKKAGKSPKKA 175
INP+LLPKK +EKA +K+P P KA KSPKK+
Sbjct: 121 INPILLPKK-SEKAASTTKTPKSPSKATKSPKKS 153
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,364,350
Number of Sequences: 1393205
Number of extensions: 14896215
Number of successful extensions: 62858
Number of sequences better than 10.0: 434
Number of HSP's better than 10.0 without gapping: 55768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62114
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
