Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005769A_C02 KMC005769A_c02
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - wh... 242 2e-63
gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus comm... 240 7e-63
pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - wh... 240 7e-63
pir||T52334 ubiquitin extension protein [imported] - potato gi|1... 240 9e-63
gb|AAO38879.1| ubiquitin/ribosomal fusion protein [Malus x domes... 239 1e-62
>pir||S40240 ubiquitin/ribosomal protein S27a fusion protein - white lupine
gi|438111|emb|CAA80334.1| ubiquitin extension protein
[Lupinus albus]
Length = 155
Score = 242 bits (617), Expect = 2e-63
Identities = 115/119 (96%), Positives = 116/119 (96%)
Frame = -2
Query: 527 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHR 348
PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHK 96
Query: 347 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPTA 171
KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCG TYVYQK A
Sbjct: 97 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGQTYVYQKADA 155
>gb|AAL66206.1|AF386524_1 ubiquitin extension protein [Pyrus communis]
Length = 154
Score = 240 bits (613), Expect = 7e-63
Identities = 114/116 (98%), Positives = 115/116 (98%)
Frame = -2
Query: 527 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHR 348
PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHK 96
Query: 347 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 180
KVKLAVLQFYKVDDS KVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
Sbjct: 97 KVKLAVLQFYKVDDSRKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 152
>pir||S40239 ubiquitin/ribosomal protein S27a fusion protein - white lupine
gi|438109|emb|CAA80333.1| ubiquitin extension protein
[Lupinus albus]
Length = 155
Score = 240 bits (613), Expect = 7e-63
Identities = 114/119 (95%), Positives = 115/119 (95%)
Frame = -2
Query: 527 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHR 348
PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHK 96
Query: 347 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPTA 171
KVKLAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQK A
Sbjct: 97 KVKLAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKADA 155
>pir||T52334 ubiquitin extension protein [imported] - potato
gi|1771780|emb|CAA71132.1| ubiquitin extension protein
[Solanum tuberosum]
Length = 156
Score = 240 bits (612), Expect = 9e-63
Identities = 114/116 (98%), Positives = 115/116 (98%)
Frame = -2
Query: 527 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHR 348
PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK +
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKK 96
Query: 347 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 180
KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
Sbjct: 97 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 152
>gb|AAO38879.1| ubiquitin/ribosomal fusion protein [Malus x domestica]
Length = 156
Score = 239 bits (611), Expect = 1e-62
Identities = 113/116 (97%), Positives = 115/116 (98%)
Frame = -2
Query: 527 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHR 348
PPDQQRLIFAGKQLED RTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+
Sbjct: 37 PPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHK 96
Query: 347 KVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 180
KVKLAVLQFYKVDDSG+VQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK
Sbjct: 97 KVKLAVLQFYKVDDSGQVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,174,917
Number of Sequences: 1393205
Number of extensions: 12225322
Number of successful extensions: 77004
Number of sequences better than 10.0: 1227
Number of HSP's better than 10.0 without gapping: 58473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73400
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
