Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005767A_C01 KMC005767A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM71248.1| ring-H2 zinc finger protein [Zea mays] 51 1e-05
gb|AAL59234.1|AF448416_14 ring-H2 zinc finger protein [Zea mays] 50 2e-05
ref|NP_177375.1| RING-H2 zinc finger protein (ATL3); protein id:... 45 5e-04
sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|74915... 41 0.010
ref|NP_595526.1| hypothetical protein [Schizosaccharomyces pombe... 41 0.010
>gb|AAM71248.1| ring-H2 zinc finger protein [Zea mays]
Length = 304
Score = 50.8 bits (120), Expect = 1e-05
Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Frame = -3
Query: 588 NVLIWGTDTQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPS 409
NVL WGT ++++ PP+A SSS+S N LVIDIP+
Sbjct: 168 NVLFWGTHDEVTNA---------GLVAPPRAATSASSSASGRRKEN-------LVIDIPT 211
Query: 408 QITS----------SSLSPSASTFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSAS- 262
+ + S L S + DE++SP+ RLRSL+RLLS + T S S
Sbjct: 212 RAVATTTTTPPPANSPLPASRMPGSADEMRSPVSARLRSLRRLLSRGKQAMVGTSSSYSP 271
Query: 261 SDVEQ--AGG 238
D+EQ AGG
Sbjct: 272 RDIEQGLAGG 281
>gb|AAL59234.1|AF448416_14 ring-H2 zinc finger protein [Zea mays]
Length = 304
Score = 50.1 bits (118), Expect = 2e-05
Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Frame = -3
Query: 588 NVLIWGTDTQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPS 409
NVL WGT ++++ PP+A SSS+S N LVIDIP+
Sbjct: 168 NVLFWGTHDEVTNA---------GLVAPPRAAPSASSSASGRRKEN-------LVIDIPT 211
Query: 408 QITS----------SSLSPSASTFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSAS- 262
+ + S L S + DE++SP+ RLRSL+RLLS + T S S
Sbjct: 212 RAVATTTTTPPPANSPLPASRMPGSADEMRSPVSARLRSLRRLLSRGKQAMVGTSSSYSP 271
Query: 261 SDVEQ--AGG 238
D+EQ AGG
Sbjct: 272 RDIEQGLAGG 281
>ref|NP_177375.1| RING-H2 zinc finger protein (ATL3); protein id: At1g72310.1,
supported by cDNA: gi_4928396 [Arabidopsis thaliana]
gi|25406162|pir||H96746 RING-H2 zinc finger protein
(ATL3), 86824-85850 [imported] - Arabidopsis thaliana
gi|4928397|gb|AAD33581.1|AF132013_1 RING-H2 zinc finger
protein ATL3 [Arabidopsis thaliana]
gi|12323672|gb|AAG51805.1|AC067754_21 RING-H2 zinc
finger protein ATL3; 90350-91324 [Arabidopsis thaliana]
gi|12325277|gb|AAG52584.1|AC016529_15 RING-H2 zinc
finger protein (ATL3); 86824-85850 [Arabidopsis
thaliana]
Length = 324
Score = 45.4 bits (106), Expect = 5e-04
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Frame = -3
Query: 588 NVLIWGTDTQISSTTTPTSSLE-------GSTSQPPQAQXPCSSSSSSHTSCNCSNGNGE 430
NVL+WG Q+S+ T + E S SQ SSS +H
Sbjct: 216 NVLVWGRQDQVSTGNTNVGTQEDGAAGNGASQSQEAVVLDISDSSSRNHN---------- 265
Query: 429 LVIDIPSQITSSSLSPSASTFAEDELKSPIIGRLRSLKRLLSWDTRL---NPLTPRSASS 259
SSS S E+E KSP+ RLRSL+R LS D R+ N T S+SS
Sbjct: 266 ---------VSSSSSSMRFIVEEEEAKSPMTTRLRSLRRFLSRDKRVGCSNSSTSNSSSS 316
Query: 258 D 256
+
Sbjct: 317 N 317
>sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|7491580|pir||T40167
hypothetical protein SPBC30B4.01c - fission yeast
(Schizosaccharomyces pombe) (fragment)
gi|3417427|emb|CAA20314.1| putative glucoamylase
[Schizosaccharomyces pombe]
Length = 344
Score = 41.2 bits (95), Expect = 0.010
Identities = 30/102 (29%), Positives = 49/102 (47%)
Frame = -3
Query: 564 TQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLS 385
T SS+++P+SS +T+ P + SSSSSS +S + S+ + S +SSS S
Sbjct: 106 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 165
Query: 384 PSASTFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASS 259
S+S+ + PI S S + + + R +SS
Sbjct: 166 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSS 207
Score = 39.3 bits (90), Expect = 0.038
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = -3
Query: 570 TDTQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSS 391
+ + +SSTT+ +SS S+S P SSSSSS +S + S+ + S +SSS
Sbjct: 98 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 157
Query: 390 LSPSASTFAEDELKS 346
S S+S+ + S
Sbjct: 158 SSSSSSSSSSSSSSS 172
Score = 35.4 bits (80), Expect = 0.54
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = -3
Query: 555 SSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLSPSA 376
SS+++ +SS S+S + SSSSSS +S + S+ + + S +SSS S S+
Sbjct: 138 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS 197
Query: 375 STFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASS 259
S+ + S S +S T +TP S+SS
Sbjct: 198 SSSSSRPSSSSSFITTMSSSTFISTVT----VTPSSSSS 232
Score = 32.3 bits (72), Expect = 4.6
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = -3
Query: 546 TTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLSPSASTF 367
TT +SS ST+ + P SSS+++ TS + S+ + S +SSS S S+S+
Sbjct: 95 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 154
Query: 366 AEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASSDVEQAGGRQS 229
+ S S S + T S SS + S
Sbjct: 155 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS 200
>ref|NP_595526.1| hypothetical protein [Schizosaccharomyces pombe]
gi|2117310|emb|CAB09116.1| hypothetical serine-rich
protein (52 consecutive serines); contains WSC domain;
possibly involved in carbohydrate binding; putative
proteophosphoglycan; subcellular localization of GFP
fusion-Membrane [Schizosaccharomyces pombe]
Length = 309
Score = 41.2 bits (95), Expect = 0.010
Identities = 30/102 (29%), Positives = 49/102 (47%)
Frame = -3
Query: 564 TQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLS 385
T SS+++P+SS +T+ P + SSSSSS +S + S+ + S +SSS S
Sbjct: 71 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 130
Query: 384 PSASTFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASS 259
S+S+ + PI S S + + + R +SS
Sbjct: 131 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSS 172
Score = 39.3 bits (90), Expect = 0.038
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = -3
Query: 570 TDTQISSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSS 391
+ + +SSTT+ +SS S+S P SSSSSS +S + S+ + S +SSS
Sbjct: 63 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 122
Query: 390 LSPSASTFAEDELKS 346
S S+S+ + S
Sbjct: 123 SSSSSSSSSSSSSSS 137
Score = 35.4 bits (80), Expect = 0.54
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = -3
Query: 555 SSTTTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLSPSA 376
SS+++ +SS S+S + SSSSSS +S + S+ + + S +SSS S S+
Sbjct: 103 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS 162
Query: 375 STFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASS 259
S+ + S S +S T +TP S+SS
Sbjct: 163 SSSSSRPSSSSSFITTMSSSTFISTVT----VTPSSSSS 197
Score = 32.3 bits (72), Expect = 4.6
Identities = 28/106 (26%), Positives = 43/106 (40%)
Frame = -3
Query: 546 TTPTSSLEGSTSQPPQAQXPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLSPSASTF 367
TT +SS ST+ + P SSS+++ TS + S+ + S +SSS S S+S+
Sbjct: 60 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 119
Query: 366 AEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASSDVEQAGGRQS 229
+ S S S + T S SS + S
Sbjct: 120 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,141,972
Number of Sequences: 1393205
Number of extensions: 9775324
Number of successful extensions: 43758
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 31762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38450
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
