Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005761A_C01 KMC005761A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA90524.1| peroxiredoxin Q [Sedum lineare] 198 3e-50
ref|NP_189235.1| putative peroxiredoxin; protein id: At3g26060.1... 193 1e-48
ref|NP_487223.1| bacterioferritin comigratory protein [Nostoc sp... 120 1e-26
gb|ZP_00107000.1| hypothetical protein [Nostoc punctiforme] 114 6e-25
gb|AAO53197.1| similar to Anabaena sp. (strain PCC 7120). Bacter... 105 4e-22
>dbj|BAA90524.1| peroxiredoxin Q [Sedum lineare]
Length = 186
Score = 198 bits (504), Expect = 3e-50
Identities = 96/106 (90%), Positives = 99/106 (92%)
Frame = -3
Query: 544 CTKQACAFRDSNEKFKKAGAELVVISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGV 365
CTKQACAFRDS EKFKKAGAE+V ISGD S SHKAFAKKY+LPFTLLSDEGNKVRKEWGV
Sbjct: 80 CTKQACAFRDSYEKFKKAGAEVVGISGDSSESHKAFAKKYKLPFTLLSDEGNKVRKEWGV 139
Query: 364 PGDFFGALPGRETYVLDKSGVVQLVYNNQFQPEKHIDETLKLLQSL 227
P D FG LPGRETYVLDK+GVVQLVYNNQFQPEKHIDETLKLLQSL
Sbjct: 140 PSDLFGTLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL 185
>ref|NP_189235.1| putative peroxiredoxin; protein id: At3g26060.1, supported by cDNA:
gi_15081742, supported by cDNA: gi_18252272 [Arabidopsis
thaliana] gi|9279611|dbj|BAB01069.1| peroxiredoxin
Q-like protein [Arabidopsis thaliana]
gi|15081743|gb|AAK82526.1| AT3g26060/MPE11_21
[Arabidopsis thaliana] gi|18252273|gb|AAL62017.1|
AT3g26060/MPE11_21 [Arabidopsis thaliana]
Length = 216
Score = 193 bits (490), Expect = 1e-48
Identities = 89/105 (84%), Positives = 100/105 (94%)
Frame = -3
Query: 544 CTKQACAFRDSNEKFKKAGAELVVISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGV 365
CTKQACAFRDS EKFKKAGAE++ ISGDDS+SHKAFA KY+LP+TLLSDEGNKVRK+WGV
Sbjct: 111 CTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGV 170
Query: 364 PGDFFGALPGRETYVLDKSGVVQLVYNNQFQPEKHIDETLKLLQS 230
PGD FGALPGR+TYVLDK+GVVQL+YNNQFQPEKHIDETLK L++
Sbjct: 171 PGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 215
>ref|NP_487223.1| bacterioferritin comigratory protein [Nostoc sp. PCC 7120]
gi|25319021|pir||AH2203 bacterioferritin comigratory
protein [imported] - Nostoc sp. (strain PCC 7120)
gi|17132278|dbj|BAB74882.1| bacterioferritin comigratory
protein [Nostoc sp. PCC 7120]
Length = 153
Score = 120 bits (300), Expect = 1e-26
Identities = 57/106 (53%), Positives = 77/106 (71%)
Frame = -3
Query: 544 CTKQACAFRDSNEKFKKAGAELVVISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGV 365
CT ++CAFRD E F+ AGAE++ +SGD + SH+ FA KY LPFTLLSD+G++VRK +G
Sbjct: 46 CTAESCAFRDRYEVFQTAGAEIIGVSGDSNESHQKFASKYNLPFTLLSDKGDQVRKLYGA 105
Query: 364 PGDFFGALPGRETYVLDKSGVVQLVYNNQFQPEKHIDETLKLLQSL 227
FG PGR TYV+D+ GVVQ V+++ F + H++E LK LQ L
Sbjct: 106 TA-AFGLFPGRVTYVIDQQGVVQYVFDSMFNFQGHVEEALKTLQQL 150
>gb|ZP_00107000.1| hypothetical protein [Nostoc punctiforme]
Length = 152
Score = 114 bits (286), Expect = 6e-25
Identities = 55/106 (51%), Positives = 74/106 (68%)
Frame = -3
Query: 544 CTKQACAFRDSNEKFKKAGAELVVISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGV 365
CT ++CAFRD E FK GAE+V +S D S SH+ FA KY LPFTLL+D+G++VRK +G
Sbjct: 46 CTAESCAFRDQYEVFKSVGAEVVGVSADSSESHQKFAAKYNLPFTLLTDKGDQVRKLYGA 105
Query: 364 PGDFFGALPGRETYVLDKSGVVQLVYNNQFQPEKHIDETLKLLQSL 227
FG PGR TYV+D+ GVVQ V+++ + H++E LK LQ +
Sbjct: 106 TA-AFGLFPGRVTYVIDQQGVVQYVFDSMLNFKGHVEEALKTLQQI 150
>gb|AAO53197.1| similar to Anabaena sp. (strain PCC 7120). Bacterioferritin
comigratory protein [Dictyostelium discoideum]
Length = 153
Score = 105 bits (262), Expect = 4e-22
Identities = 47/106 (44%), Positives = 76/106 (71%)
Frame = -3
Query: 544 CTKQACAFRDSNEKFKKAGAELVVISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGV 365
CTK+AC+FRD+ E+F +AGA +V +S DD+ SH F+ KYRLPFTLL+D ++ K++GV
Sbjct: 46 CTKEACSFRDNYEQFTEAGAVVVGVSSDDAESHSKFSAKYRLPFTLLTDNKGEMAKKYGV 105
Query: 364 PGDFFGALPGRETYVLDKSGVVQLVYNNQFQPEKHIDETLKLLQSL 227
+ +PGR T+++DK+ + L++++ E HI E+LK+++ L
Sbjct: 106 KKELL-LIPGRSTFIIDKNQKIALIHSSLLNAESHITESLKVIEQL 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,119,955
Number of Sequences: 1393205
Number of extensions: 8747600
Number of successful extensions: 26640
Number of sequences better than 10.0: 333
Number of HSP's better than 10.0 without gapping: 25956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26571
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
