Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005760A_C01 KMC005760A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187079.1| putative GDSL-motif lipase/acylhydrolase; prote... 88 5e-17
ref|NP_198322.1| putative protein; protein id: At5g33370.1, supp... 86 2e-16
ref|NP_194607.1| Proline-rich APG - like protein; protein id: At... 78 5e-14
dbj|BAC56011.1| P0705A05.30 [Oryza sativa (japonica cultivar-gro... 76 2e-13
ref|NP_197344.1| putative protein; protein id: At5g18430.1 [Arab... 72 3e-12
>ref|NP_187079.1| putative GDSL-motif lipase/acylhydrolase; protein id: At3g04290.1,
supported by cDNA: 1323. [Arabidopsis thaliana]
gi|6721157|gb|AAF26785.1|AC016829_9 putative GDSL-motif
lipase/acylhydrolase [Arabidopsis thaliana]
gi|21537340|gb|AAM61681.1| putative GDSL-motif
lipase/acylhydrolase [Arabidopsis thaliana]
Length = 366
Score = 87.8 bits (216), Expect = 5e-17
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = -3
Query: 462 VFNLCPNRDLYAFWDPFHPSERANRLIVERFMIGSSEYMHPMNFSTIMHLDST 304
V NLCPNRDLYAFWD FHP+E+ANR+IV + + GSS+YMHPMN ST M LDS+
Sbjct: 312 VSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAMLLDSS 364
>ref|NP_198322.1| putative protein; protein id: At5g33370.1, supported by cDNA:
34612. [Arabidopsis thaliana] gi|21592967|gb|AAM64916.1|
putative GDSL-motif lipase/acylhydrolase [Arabidopsis
thaliana] gi|28393449|gb|AAO42146.1| unknown protein
[Arabidopsis thaliana] gi|28827340|gb|AAO50514.1|
unknown protein [Arabidopsis thaliana]
Length = 366
Score = 85.5 bits (210), Expect = 2e-16
Identities = 35/50 (70%), Positives = 44/50 (88%)
Frame = -3
Query: 456 NLCPNRDLYAFWDPFHPSERANRLIVERFMIGSSEYMHPMNFSTIMHLDS 307
NLCPNRDL+AFWDPFHPSE+A+R+I ++ + GS EYMHPMN STI+ +DS
Sbjct: 315 NLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTILTVDS 364
>ref|NP_194607.1| Proline-rich APG - like protein; protein id: At4g28780.1, supported
by cDNA: 324. [Arabidopsis thaliana]
gi|7488228|pir||T04521 proline-rich protein APG homolog
F16A16.110 - Arabidopsis thaliana
gi|4218120|emb|CAA22974.1| Proline-rich APG-like protein
[Arabidopsis thaliana] gi|7269733|emb|CAB81466.1|
Proline-rich APG-like protein [Arabidopsis thaliana]
gi|21592773|gb|AAM64722.1| Proline-rich APG-like protein
[Arabidopsis thaliana] gi|27754717|gb|AAO22802.1|
putative proline-rich APG protein [Arabidopsis thaliana]
gi|28394103|gb|AAO42459.1| putative proline-rich APG
protein [Arabidopsis thaliana]
Length = 367
Score = 77.8 bits (190), Expect = 5e-14
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = -3
Query: 453 LCPNRDLYAFWDPFHPSERANRLIVERFMIGSSEYMHPMNFSTIMHLDS 307
LC +R+ YAFWDPFHP+E+A RLIV++ M GS EYM+PMN STIM LDS
Sbjct: 317 LCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIMALDS 365
>dbj|BAC56011.1| P0705A05.30 [Oryza sativa (japonica cultivar-group)]
Length = 387
Score = 76.3 bits (186), Expect = 2e-13
Identities = 31/51 (60%), Positives = 40/51 (77%)
Frame = -3
Query: 453 LCPNRDLYAFWDPFHPSERANRLIVERFMIGSSEYMHPMNFSTIMHLDSTS 301
LCP+R LY FWD FHP+ERANR+IV +FM S +YMHP N STI+ +D+ +
Sbjct: 332 LCPDRSLYVFWDNFHPTERANRIIVSQFMSASPDYMHPFNLSTILAMDAAT 382
>ref|NP_197344.1| putative protein; protein id: At5g18430.1 [Arabidopsis thaliana]
Length = 349
Score = 72.0 bits (175), Expect = 3e-12
Identities = 28/48 (58%), Positives = 39/48 (80%)
Frame = -3
Query: 456 NLCPNRDLYAFWDPFHPSERANRLIVERFMIGSSEYMHPMNFSTIMHL 313
NLCPNR+LY FWD FHP+E+ANR+IV + G+++YM+PMN S+ + L
Sbjct: 302 NLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSALAL 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,234,095
Number of Sequences: 1393205
Number of extensions: 7719328
Number of successful extensions: 16003
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 15726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16001
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
