Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005756A_C01 KMC005756A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P24929|RK12_TOBAC 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PREC... 190 1e-47
emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum] 190 1e-47
sp|P36688|RK12_NICSY 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PREC... 188 3e-47
sp|P02398|RK12_SPIOL 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PREC... 176 1e-43
ref|NP_189421.1| 50S ribosomal protein L12-A; protein id: At3g27... 175 2e-43
>sp|P24929|RK12_TOBAC 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PRECURSOR (CL12)
gi|100377|pir||S21061 ribosomal protein L12.1 precursor,
chloroplast - common tobacco gi|20018|emb|CAA44214.1|
ribosomal protein L12-1 [Nicotiana tabacum]
Length = 186
Score = 190 bits (482), Expect = 1e-47
Identities = 102/119 (85%), Positives = 110/119 (91%)
Frame = -3
Query: 511 DISSLTLEQAKTLVDYLQDKLGVSAASFAPAAIAAAPAAADAAVAVVEEQTEFDVVIQEV 332
+IS+LTL A+ LV+YLQDKLGV+AASFAPAA+AAAP AA A AVVEE+TEFDVVI EV
Sbjct: 67 EISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEEKTEFDVVIDEV 126
Query: 331 PSNARIAAIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVAI 155
PSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKV+I
Sbjct: 127 PSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
>emb|CAA44226.1| ribosomal protein L12-1a [Nicotiana tabacum]
Length = 191
Score = 190 bits (482), Expect = 1e-47
Identities = 102/119 (85%), Positives = 110/119 (91%)
Frame = -3
Query: 511 DISSLTLEQAKTLVDYLQDKLGVSAASFAPAAIAAAPAAADAAVAVVEEQTEFDVVIQEV 332
+IS+LTL A+ LV+YLQDKLGV+AASFAPAA+AAAP AA A AVVEE+TEFDVVI EV
Sbjct: 67 EISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAAEAPAVVEEKTEFDVVIDEV 126
Query: 331 PSNARIAAIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVAI 155
PSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKV+I
Sbjct: 127 PSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
>sp|P36688|RK12_NICSY 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PRECURSOR (CL12)
gi|478604|pir||S21111 ribosomal protein L12 precursor,
chloroplast - wood tobacco gi|248303|gb|AAB21989.1|
ribosomal protein L12; CL12 [Nicotiana sylvestris]
Length = 186
Score = 188 bits (478), Expect = 3e-47
Identities = 101/119 (84%), Positives = 109/119 (90%)
Frame = -3
Query: 511 DISSLTLEQAKTLVDYLQDKLGVSAASFAPAAIAAAPAAADAAVAVVEEQTEFDVVIQEV 332
+IS+LTL A+ LV+YLQDKLGV+AASFAPAA+ AAP AA A AVVEE+TEFDVVI EV
Sbjct: 67 EISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAAEAPAVVEEKTEFDVVIDEV 126
Query: 331 PSNARIAAIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVAI 155
PSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKV+I
Sbjct: 127 PSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
>sp|P02398|RK12_SPIOL 50S RIBOSOMAL PROTEIN L12, CHLOROPLAST PRECURSOR (CL12)
gi|71136|pir||R7SP12 ribosomal protein L12 precursor,
chloroplast - spinach gi|170115|gb|AAA34031.1| ribosomal
L12 precursor
Length = 189
Score = 176 bits (447), Expect = 1e-43
Identities = 94/119 (78%), Positives = 103/119 (85%)
Frame = -3
Query: 508 ISSLTLEQAKTLVDYLQDKLGVSAASFAPAAIAAAPAAADAAVAVVEEQTEFDVVIQEVP 329
+S LTLE+A+ LVD+LQDKLGVSAASFAPAA AAP A A VEE+TEFDV I EVP
Sbjct: 71 LSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEKTEFDVSIDEVP 130
Query: 328 SNARIAAIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVAIV 152
SNARI+ IKAVRALTSL LKEAKELIEGLPKK KEGVSKD+AEDAKKQLE+AGAKV+IV
Sbjct: 131 SNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV 189
>ref|NP_189421.1| 50S ribosomal protein L12-A; protein id: At3g27830.1, supported by
cDNA: gi_15450973, supported by cDNA: gi_15810118
[Arabidopsis thaliana] gi|548653|sp|P36210|R121_ARATH
50S ribosomal protein L12-1, chloroplast precursor
(CL12-A) gi|541895|pir||A53394 ribosomal protein L12.A
precursor, chloroplast - Arabidopsis thaliana
gi|468771|emb|CAA48181.1| ribosomal protein L12
[Arabidopsis thaliana] gi|11994488|dbj|BAB02529.1| 50S
ribosomal protein L12-like [Arabidopsis thaliana]
gi|15450974|gb|AAK96758.1| 50s ribosomal protein
L12-like [Arabidopsis thaliana]
gi|15810119|gb|AAL07203.1| putative 50S ribosomal
protein L12-A [Arabidopsis thaliana]
gi|22530940|gb|AAM96974.1| 50S ribosomal protein L12-A
[Arabidopsis thaliana] gi|23198422|gb|AAN15738.1| 50S
ribosomal protein L12-A [Arabidopsis thaliana]
Length = 191
Score = 175 bits (444), Expect = 2e-43
Identities = 94/119 (78%), Positives = 103/119 (85%)
Frame = -3
Query: 511 DISSLTLEQAKTLVDYLQDKLGVSAASFAPAAIAAAPAAADAAVAVVEEQTEFDVVIQEV 332
+ISSLTLE+A+ LVDYLQDK GVS S APAA A A A A AVVEEQTEFDVVI EV
Sbjct: 72 EISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQTEFDVVINEV 131
Query: 331 PSNARIAAIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVAI 155
PS++RIA IKAVRALTSLALKEAKELIEGLPKKFKEG++KDEAE+AKK LEEAGAKV+I
Sbjct: 132 PSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,560,978
Number of Sequences: 1393205
Number of extensions: 10418031
Number of successful extensions: 139822
Number of sequences better than 10.0: 1997
Number of HSP's better than 10.0 without gapping: 75184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122392
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
