KMC005752A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005752A_C01 KMC005752A_c01
gttcaaagcgaaacattcaatgcaatcttcaatatcaagcaGTATTCAAGTCGAAGTTAT
CGACGCCTACAATACAAATAGCTAGTAAGTATGTTTCCCTAACCTTAGCCAATTCCCTTA
CAAAGCTGCGACTCCAATCCATTCACATCTTTGCTTTCCCGTGTTAGCTCGCTTCCTTTT
GTCCTTTGGCTTCATCGCCAAGCGTCTCCGTACCCTTCATAAGTATAGGTAACTTAATCA
CTAATTGAATTACTCACTAACTCAAAGCCTAAACTATGACTTCAAGAAATTGACTCGAAG
CGAACACATGTTAAACTACTCTTCCTCATACCACAGCTACATCAATTAGTAGAGTACTTA
TCCTCTTTTTGACATGAAAACCATTTTGTAAAACAAATAGCAACTCCTTCCTAATCAACT
GTTAAACTTCAATTTTCACAATAACAATGAAAATATTTATTTTTCTTTAAAACTTGCTTA
CTCGAGGCTAAAACATATACAAGAGTTGAAGGCTTACGAAAATCAAGTTTTAGAAACTTG
TCGGCGAAAAGTCGCCATAAAAAGTTGCCCCTCACGGGGTTGACGGAGAAACTGTCGCCG
GAAACACAAAGGAAGGGTGTTCCTTCATCCTTTCGCGGCAAGGAATTCAACGACGTTGTC
CGTTTCCCCAAAGAGTCGACGGTTTGCCCAGAAAGTTCAGCCGATGGTCGACGGTGGTCG
TCGGGGTCGTCGAATAAAATGACCGAAATATGAAATAGAAAATAGGGATTTACTCTCCTC
GCGACAAGGATCGCCGCAGTACACTCCGTTTTTCCATTGGTCGTCGGAGTTGACCGGAAA
AAGCTCCCGACGGCGGCAGCGGCCGCGGTCCGCGGCGACGGAACGACGATCCGGAACATG
GGTTTTG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005752A_C01 KMC005752A_c01
         (907 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_141502.1| similar to Formin 1 isoforms I/II/III (Limb def...    37  0.53
gb|AAK16728.1|AF332962_1 ferrochelatase [Chlamydomonas reinhardtii]    36  0.91
dbj|BAB63481.1| P0002B05.1 [Oryza sativa (japonica cultivar-grou...    35  1.6
ref|NP_253244.1| type 4 fimbrial biogenesis protein PilY1 [Pseud...    34  2.7
pir||E71615 probable amine transporter PFB0435c - malaria parasi...    34  3.5

>ref|XP_141502.1| similar to Formin 1 isoforms I/II/III (Limb deformity protein) [Mus
           musculus]
          Length = 691

 Score = 36.6 bits (83), Expect = 0.53
 Identities = 25/84 (29%), Positives = 40/84 (46%)
 Frame = -3

Query: 716 HRRPSAELSGQTVDSLGKRTTSLNSLPRKDEGTPFLCVSGDSFSVNPVRGNFLWRLFADK 537
           H+  + EL    +    +R  +L SL +K E      + GDS S +PV+ N         
Sbjct: 403 HQTAAYELQAFNLSWYWERIINLASLIKKGEQDRIASLKGDSKSSSPVKDNI-------S 455

Query: 536 FLKLDFRKPSTLVYVLASSKQVLK 465
            LKL++  P  L Y+  +S+Q +K
Sbjct: 456 RLKLEYHIPPILTYIGGASEQQMK 479

>gb|AAK16728.1|AF332962_1 ferrochelatase [Chlamydomonas reinhardtii]
          Length = 493

 Score = 35.8 bits (81), Expect = 0.91
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 743 VILFDDPDDHRRPSAELSGQTVDSLGKRTTSLNSLPRKDEGTPFL 609
           V+ F DP+D R+P+A  +G  VD +G    +L    + D+  PFL
Sbjct: 64  VVSFVDPNDIRKPAAAAAGPAVDKVGVLLLNLGGPEKLDDVKPFL 108

>dbj|BAB63481.1| P0002B05.1 [Oryza sativa (japonica cultivar-group)]
           gi|15528736|dbj|BAB64682.1| P0697C12.17 [Oryza sativa
           (japonica cultivar-group)]
          Length = 1043

 Score = 35.0 bits (79), Expect = 1.6
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +3

Query: 783 DKDRRSTLRFSIGRRS*PEKAPDGGSGRGPRRRNDDPEHG 902
           D DR S L   +G  +  E+AP G  G G RRR D P  G
Sbjct: 289 DPDRVSILTIMLGVGASEERAPKGHDGAGERRRGDQPAPG 328

>ref|NP_253244.1| type 4 fimbrial biogenesis protein PilY1 [Pseudomonas aeruginosa
            PA01] gi|11352777|pir||D83076 type 4 fimbrial biogenesis
            protein PilY1 PA4554 [imported] - Pseudomonas aeruginosa
            (strain PAO1) gi|9950799|gb|AAG07942.1|AE004869_6 type 4
            fimbrial biogenesis protein PilY1 [Pseudomonas aeruginosa
            PAO1]
          Length = 1161

 Score = 34.3 bits (77), Expect = 2.7
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
 Frame = -3

Query: 899  MFRIVVPSPRTAAAAAVGSFFRSTPTTNGKTECTAAILVARRVNPYFLFHISVILFDDPD 720
            + + + P+    A  A    +   P T G+T  T   L  + V             D   
Sbjct: 1052 LLQTITPNDDPCADGASNWTYGLDPYTGGRTSFTVFDLARQGV------------VDSKS 1099

Query: 719  DH--RRPSAELSGQTVDSLGKRTTSLNSLPRKDEGTPFLCVSGDSFSVNP---VRGNFLW 555
            D+   + +  +SG     LG  T S N     ++G P +C SG+  +VNP    RG   W
Sbjct: 1100 DYSYNKQNVAVSGTEQKGLGGLTLSTN-----EQGNPEVCSSGECLTVNPGPNTRGRQNW 1154

Query: 554  R 552
            R
Sbjct: 1155 R 1155

>pir||E71615 probable amine transporter PFB0435c - malaria parasite  (Plasmodium
           falciparum)
          Length = 1138

 Score = 33.9 bits (76), Expect = 3.5
 Identities = 23/83 (27%), Positives = 45/83 (53%)
 Frame = +2

Query: 287 KLTRSEHMLNYSSSYHSYIN**STYPLFDMKTIL*NK*QLLPNQLLNFNFHNNNENIYFS 466
           K+ +SEH+ N   +    +N  S Y + DM      K +   N+  N N++NN++N+  S
Sbjct: 209 KIVKSEHICNEKKT--KGVNGKSKYYIHDMN----RKDKQKKNKHNNINYNNNDDNVNNS 262

Query: 467 LKLAYSRLKHIQELKAYENQVLE 535
            +  +S+ ++ Q +  YEN++ +
Sbjct: 263 CEYNFSK-ENSQNMCHYENKIYD 284

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,295,437
Number of Sequences: 1393205
Number of extensions: 15786928
Number of successful extensions: 48765
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 46054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48713
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49363855696
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF045b09_f BP030652 1 533
2 MWM115g08_f AV766578 454 554
3 MWM065b02_f AV765738 483 679
4 MFB015c09_f BP035018 483 946




Lotus japonicus
Kazusa DNA Research Institute