Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005750A_C01 KMC005750A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42372|LCB2_ROBPS Bark agglutinin I, polypeptide B precursor ... 74 2e-12
sp|Q41159|LCB1_ROBPS Bark agglutinin I, polypeptide A precursor ... 69 5e-11
dbj|BAA36414.1| lectin [Robinia pseudoacacia] 69 5e-11
sp|Q41162|LCS1_ROBPS SEED AGGLUTININ I PRECURSOR (RPSAI) (LECRPA... 69 5e-11
sp|Q41161|LCS2_ROBPS SEED AGGLUTININ II PRECURSOR (RPSAII) (LECR... 69 5e-11
>sp|Q42372|LCB2_ROBPS Bark agglutinin I, polypeptide B precursor (RPBAI) (LECRPA2)
gi|1085980|pir||S48033 lectin precursor - Robinia
pseudoacacia (black locust) gi|538529|dbj|BAA04604.1|
lectin precursor [Robinia pseudoacacia]
gi|606718|gb|AAA80182.1| lectin
gi|4115543|dbj|BAA36413.1| lectin [Robinia pseudoacacia]
Length = 286
Score = 73.9 bits (180), Expect = 2e-12
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = -1
Query: 617 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAA 468
++VDLK VLPE+VRVGF+ATTGL+ D+V+TNDVLSWSFES+L G A+
Sbjct: 226 AIVDLKKVLPEWVRVGFTATTGLSEDYVQTNDVLSWSFESNLPGGNSVAS 275
>sp|Q41159|LCB1_ROBPS Bark agglutinin I, polypeptide A precursor (RPBAI) (LECRPA1)
gi|606716|gb|AAA80181.1| lectin
Length = 285
Score = 68.9 bits (167), Expect = 5e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = -1
Query: 617 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAA 468
++VD+K+VLPE+VR GFSATTG++ +V+TNDVLSWSFES+L G A+
Sbjct: 225 AIVDVKDVLPEWVRFGFSATTGIDKGYVQTNDVLSWSFESNLPGGNSVAS 274
>dbj|BAA36414.1| lectin [Robinia pseudoacacia]
Length = 285
Score = 68.9 bits (167), Expect = 5e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = -1
Query: 617 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAA 468
++VD+K+VLPE+VR GFSATTG++ +V+TNDVLSWSFES+L G A+
Sbjct: 225 AIVDVKDVLPEWVRFGFSATTGIDKGYVQTNDVLSWSFESNLPGGNSVAS 274
>sp|Q41162|LCS1_ROBPS SEED AGGLUTININ I PRECURSOR (RPSAI) (LECRPAS1)
gi|2147086|pir||S62690 agglutinin I precursor - black
locust gi|1141771|gb|AAC49272.1| lectin precursor
gi|1587965|prf||2207378B lectin II
Length = 285
Score = 68.9 bits (167), Expect = 5e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = -1
Query: 617 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAA 468
++VD+K+VLPE+VR GFSATTG++ +V+TNDVLSWSFES+L G A+
Sbjct: 225 AIVDVKDVLPEWVRFGFSATTGIDTGYVQTNDVLSWSFESNLPGGNSVAS 274
>sp|Q41161|LCS2_ROBPS SEED AGGLUTININ II PRECURSOR (RPSAII) (LECRPAS2)
gi|2147088|pir||S62691 agglutinin II precursor - black
locust gi|1141769|gb|AAC49271.1| lectin precursor
gi|1587964|prf||2207378A lectin I
Length = 285
Score = 68.9 bits (167), Expect = 5e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = -1
Query: 617 SVVDLKNVLPEYVRVGFSATTGLNPDHVETNDVLSWSFESDLKAGGPQAA 468
++VD+K+VLPE+VR GFSATTG++ +V+TNDVLSWSFES+L G A+
Sbjct: 225 AIVDVKDVLPEWVRFGFSATTGIDTGYVQTNDVLSWSFESNLPGGNSVAS 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,291,389
Number of Sequences: 1393205
Number of extensions: 12210199
Number of successful extensions: 30888
Number of sequences better than 10.0: 267
Number of HSP's better than 10.0 without gapping: 29626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30760
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
