Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005747A_C01 KMC005747A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566108.1| expressed protein; protein id: At2g47710.1, sup... 207 1e-52
gb|AAM63890.1| unknown [Arabidopsis thaliana] 204 7e-52
gb|AAM09541.1|AF491815_1 putative universal stress protein USP1 ... 178 4e-44
dbj|BAC16006.1| contains ESTs AU063900(E1774),AU094307(E4059)~si... 177 1e-43
ref|NP_566406.1| ethylene-responsive protein, putative; protein ... 113 2e-24
>ref|NP_566108.1| expressed protein; protein id: At2g47710.1, supported by cDNA:
2847., supported by cDNA: gi_15451079, supported by
cDNA: gi_20148412 [Arabidopsis thaliana]
gi|25409055|pir||F84918 hypothetical protein At2g47710
[imported] - Arabidopsis thaliana
gi|3738285|gb|AAC63627.1| expressed protein [Arabidopsis
thaliana] gi|15451080|gb|AAK96811.1| Unknown protein
[Arabidopsis thaliana] gi|20148413|gb|AAM10097.1|
unknown protein [Arabidopsis thaliana]
Length = 162
Score = 207 bits (526), Expect = 1e-52
Identities = 102/156 (65%), Positives = 120/156 (76%), Gaps = 3/156 (1%)
Frame = -1
Query: 590 KQVMVIGIDDSEHSVYAINWTLDHFFAK---NPSFKLVLVHARPSATSAVGFAGPVYAGA 420
K VMV+G+DDSE S YA+ WTLD FFA N FKL +VHA+P+A SAVG AGP G
Sbjct: 7 KSVMVVGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAKPNAVSAVGLAGP---GT 63
Query: 419 AEVLPIVDSDLKKIAARVLENAKQICIKNNITDVVVEAVEGDPTNVLC*AVEKYHASVLV 240
AEV+P VD+DLK AA+V+E AK IC ++ V+E EGD N+LC V+K+HAS+LV
Sbjct: 64 AEVVPYVDADLKHTAAKVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHASILV 123
Query: 239 VGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPK 132
VGSHGYGA+KRAVLGS SDYCAHHAHCSVMIVKKPK
Sbjct: 124 VGSHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKKPK 159
>gb|AAM63890.1| unknown [Arabidopsis thaliana]
Length = 162
Score = 204 bits (519), Expect = 7e-52
Identities = 101/156 (64%), Positives = 119/156 (75%), Gaps = 3/156 (1%)
Frame = -1
Query: 590 KQVMVIGIDDSEHSVYAINWTLDHFFAK---NPSFKLVLVHARPSATSAVGFAGPVYAGA 420
K VMV+G+DDSE S YA+ WTLD FFA N FKL +VHA+P+A SAVG AGP G
Sbjct: 7 KSVMVVGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAKPNAVSAVGLAGP---GT 63
Query: 419 AEVLPIVDSDLKKIAARVLENAKQICIKNNITDVVVEAVEGDPTNVLC*AVEKYHASVLV 240
AEV+P VD+DLK AA+V+E AK IC ++ V+E EGD N+LC V+K+HAS+LV
Sbjct: 64 AEVVPYVDADLKHTAAKVVEKAKAICQSRSVHRAVIEVFEGDARNILCEVVDKHHASILV 123
Query: 239 VGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPK 132
VGSHGYGA+ RAVLGS SDYCAHHAHCSVMIVKKPK
Sbjct: 124 VGSHGYGAIXRAVLGSTSDYCAHHAHCSVMIVKKPK 159
>gb|AAM09541.1|AF491815_1 putative universal stress protein USP1 [Oryza sativa (indica
cultivar-group)]
Length = 171
Score = 178 bits (452), Expect = 4e-44
Identities = 91/159 (57%), Positives = 120/159 (75%), Gaps = 4/159 (2%)
Frame = -1
Query: 596 EKKQVMVIGIDDSEHSVYAINWTLDHF---FAKNPSFKLVLVHARPSATSAVGF-AGPVY 429
++K V+V+G+DDSEHS YA+ WT+ H A +LV+VHA+PS +S VGF AGP
Sbjct: 8 QRKTVVVVGVDDSEHSNYALEWTMQHLASGMAGGGGAELVIVHAKPSPSSVVGFGAGP-- 65
Query: 428 AGAAEVLPIVDSDLKKIAARVLENAKQICIKNNITDVVVEAVEGDPTNVLC*AVEKYHAS 249
G+ EV+ V++DL+K A V+E A+++CI N + ++E +EG+P VLC AVEK+ A
Sbjct: 66 -GSGEVVRYVEADLRKTAEDVVEKARRLCIANAM-HALIEVIEGEPRYVLCNAVEKHSAG 123
Query: 248 VLVVGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPK 132
+LVVGSHGYGA+KRA LGSVSDYCAHHAHCSVMIVK+PK
Sbjct: 124 LLVVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
>dbj|BAC16006.1| contains ESTs AU063900(E1774),AU094307(E4059)~similar to universal
stress protein USP1 [Oryza sativa (japonica
cultivar-group)]
Length = 171
Score = 177 bits (449), Expect = 1e-43
Identities = 91/157 (57%), Positives = 119/157 (74%), Gaps = 4/157 (2%)
Frame = -1
Query: 590 KQVMVIGIDDSEHSVYAINWTLDHF---FAKNPSFKLVLVHARPSATSAVGF-AGPVYAG 423
K V+V+G+DDSEHS YA+ WT+ H A + +LV+VHA+PS +S VGF AGP G
Sbjct: 10 KTVVVVGVDDSEHSNYALEWTMQHLASGMAGSGGAELVIVHAKPSPSSVVGFGAGP---G 66
Query: 422 AAEVLPIVDSDLKKIAARVLENAKQICIKNNITDVVVEAVEGDPTNVLC*AVEKYHASVL 243
+ EV+ V++DL+K A V+E A+++CI N + ++E +EG+P VLC AVEK+ A +L
Sbjct: 67 SGEVVRYVEADLRKTAEDVVEKARRLCIANAM-HALIEVIEGEPRYVLCNAVEKHSAGLL 125
Query: 242 VVGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPK 132
VVGSHGYGA+KRA LGSVSDYCAHHAHCSVMIVK+PK
Sbjct: 126 VVGSHGYGAIKRAFLGSVSDYCAHHAHCSVMIVKQPK 162
>ref|NP_566406.1| ethylene-responsive protein, putative; protein id: At3g11930.1,
supported by cDNA: 7474. [Arabidopsis thaliana]
Length = 199
Score = 113 bits (282), Expect = 2e-24
Identities = 68/164 (41%), Positives = 97/164 (58%), Gaps = 14/164 (8%)
Frame = -1
Query: 581 MVIGIDDSEHSVYAINWTLDHFF--------AKNPSFKLVLVHARPSATSAVGF-AGP-- 435
MV+ ID+S+ S YA+ W +DHF A+ S L ++H + F AGP
Sbjct: 35 MVVAIDESDSSFYALQWVIDHFSNLLLTTAAAEAESGMLTVIHVQSPFNHFAAFPAGPGG 94
Query: 434 --VYAGAAEVLPIVDSDLKKIAARVLENAKQICIKNNI-TDVVVEAVEGDPTNVLC*AVE 264
VYA ++ ++ V ++ +A +L A Q+C I T+ +V +EG+ ++C AVE
Sbjct: 95 ATVYASSS-MIESVKKAQQETSAALLSRALQMCRAKQIRTETLV--LEGEAKEMICEAVE 151
Query: 263 KYHASVLVVGSHGYGALKRAVLGSVSDYCAHHAHCSVMIVKKPK 132
K H +LVVGS G G +KRA LGSVSDYCAHHA+C ++IVK PK
Sbjct: 152 KMHVDLLVVGSRGLGKIKRAFLGSVSDYCAHHANCPILIVKPPK 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,616,962
Number of Sequences: 1393205
Number of extensions: 11618156
Number of successful extensions: 48097
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 43875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47614
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
