Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005744A_C01 KMC005744A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190339.1| putative protein; protein id: At3g47550.1 [Arab... 67 4e-11
ref|NP_178396.1| unknown protein; protein id: At2g02960.1, suppo... 62 2e-09
ref|NP_568953.1| expressed protein; protein id: At5g62460.1, sup... 61 4e-09
gb|AAM61387.1| nucleoside triphosphatase, putative [Arabidopsis ... 38 0.036
ref|NP_172878.1| nucleoside triphosphatase, putative; protein id... 38 0.036
>ref|NP_190339.1| putative protein; protein id: At3g47550.1 [Arabidopsis thaliana]
gi|11290553|pir||T45715 hypothetical protein F1P2.100 -
Arabidopsis thaliana gi|6522538|emb|CAB61981.1| putative
protein [Arabidopsis thaliana]
Length = 288
Score = 67.4 bits (163), Expect = 4e-11
Identities = 34/51 (66%), Positives = 39/51 (75%), Gaps = 2/51 (3%)
Frame = -1
Query: 378 CYIKAWAISILQRRRQKQEAAALAATQVGFVFQFG--QGKGLQFAIAPGPP 232
CYI AWAI ILQRRRQ+QEAAALAA +V F+ G Q +GL FA+AP PP
Sbjct: 230 CYIMAWAIGILQRRRQRQEAAALAAAEVTFMIHGGGPQRRGLHFAVAPQPP 280
>ref|NP_178396.1| unknown protein; protein id: At2g02960.1, supported by cDNA:
gi_17529099, supported by cDNA: gi_20259116 [Arabidopsis
thaliana] gi|25365876|pir||F84442 hypothetical protein
At2g02960 [imported] - Arabidopsis thaliana
gi|3461820|gb|AAC32914.1| unknown protein [Arabidopsis
thaliana] gi|17529100|gb|AAL38760.1| unknown protein
[Arabidopsis thaliana] gi|20259117|gb|AAM14274.1|
unknown protein [Arabidopsis thaliana]
Length = 271
Score = 61.6 bits (148), Expect = 2e-09
Identities = 31/47 (65%), Positives = 36/47 (75%)
Frame = -1
Query: 378 CYIKAWAISILQRRRQKQEAAALAATQVGFVFQFGQGKGLQFAIAPG 238
CYI AWAISILQRRRQ+QEAAAL ATQ V Q GQ + + F ++PG
Sbjct: 205 CYIMAWAISILQRRRQRQEAAAL-ATQFALVLQSGQPRTVHFTVSPG 250
>ref|NP_568953.1| expressed protein; protein id: At5g62460.1, supported by cDNA:
gi_16974606 [Arabidopsis thaliana]
gi|10178077|dbj|BAB11496.1| gene_id:K19B1.7~unknown
protein [Arabidopsis thaliana]
gi|16974607|gb|AAL31206.1| AT5g62460/K19B1_7
[Arabidopsis thaliana] gi|22655448|gb|AAM98316.1|
At5g62460/K19B1_7 [Arabidopsis thaliana]
Length = 307
Score = 60.8 bits (146), Expect = 4e-09
Identities = 32/52 (61%), Positives = 36/52 (68%), Gaps = 6/52 (11%)
Frame = -1
Query: 378 CYIKAWAISILQRRRQKQEAAALAATQVGFVFQFGQG------KGLQFAIAP 241
CYI AWAISILQRRRQ+QEAAALAA +V F+ G G GL FA+ P
Sbjct: 241 CYIMAWAISILQRRRQRQEAAALAAAEVAFMLHSGGGGGGQRRGGLHFAVPP 292
>gb|AAM61387.1| nucleoside triphosphatase, putative [Arabidopsis thaliana]
Length = 265
Score = 37.7 bits (86), Expect = 0.036
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -1
Query: 378 CYIKAWAISILQRRRQKQEAAALA 307
CYI A AISIL RRRQ+QEAA LA
Sbjct: 219 CYIMASAISILHRRRQRQEAADLA 242
>ref|NP_172878.1| nucleoside triphosphatase, putative; protein id: At1g14260.1,
supported by cDNA: 118756. [Arabidopsis thaliana]
Length = 265
Score = 37.7 bits (86), Expect = 0.036
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -1
Query: 378 CYIKAWAISILQRRRQKQEAAALA 307
CYI A AISIL RRRQ+QEAA LA
Sbjct: 219 CYIMASAISILHRRRQRQEAADLA 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,532,581
Number of Sequences: 1393205
Number of extensions: 7724852
Number of successful extensions: 21422
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21377
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
