Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005743A_C01 KMC005743A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567760.1| putative Proline synthetase associated protein;... 157 5e-38
gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thali... 157 5e-38
pir||B86254 hypothetical protein [imported] - Arabidopsis thalia... 149 2e-35
ref|NP_563897.1| putative Proline synthetase associated protein;... 144 7e-34
pir||T04809 hypothetical protein F10M23.200 - Arabidopsis thalia... 135 2e-31
>ref|NP_567760.1| putative Proline synthetase associated protein; protein id:
At4g26860.1, supported by cDNA: 11679., supported by
cDNA: gi_14030628, supported by cDNA: gi_17978898
[Arabidopsis thaliana]
Length = 244
Score = 157 bits (398), Expect = 5e-38
Identities = 77/91 (84%), Positives = 82/91 (89%)
Frame = -3
Query: 498 VELAKHVKDSCPNLVFSGLMTIGMLDYTSTPQNFQALSNCRTEVCKALEMDEEQCELSMG 319
VELA+HVK CPNLVFSGLMTIGM DYTSTP+NF+ LSNCR +VCKAL M E+Q ELSMG
Sbjct: 152 VELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRTLSNCRADVCKALGMAEDQFELSMG 211
Query: 318 MSGDFELAIEMGSTNVRVGSTIFGPREYAKK 226
MSGDFELAIEMGSTNVRVGSTIFGPREY KK
Sbjct: 212 MSGDFELAIEMGSTNVRVGSTIFGPREYPKK 242
>gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200
[Arabidopsis thaliana] gi|21536981|gb|AAM61322.1|
putative proline synthetase associated protein
[Arabidopsis thaliana]
Length = 244
Score = 157 bits (398), Expect = 5e-38
Identities = 77/91 (84%), Positives = 82/91 (89%)
Frame = -3
Query: 498 VELAKHVKDSCPNLVFSGLMTIGMLDYTSTPQNFQALSNCRTEVCKALEMDEEQCELSMG 319
VELA+HVK CPNLVFSGLMTIGM DYTSTP+NF+ LSNCR +VCKAL M E+Q ELSMG
Sbjct: 152 VELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRTLSNCRADVCKALGMAEDQFELSMG 211
Query: 318 MSGDFELAIEMGSTNVRVGSTIFGPREYAKK 226
MSGDFELAIEMGSTNVRVGSTIFGPREY KK
Sbjct: 212 MSGDFELAIEMGSTNVRVGSTIFGPREYPKK 242
>pir||B86254 hypothetical protein [imported] - Arabidopsis thaliana
gi|3157934|gb|AAC17617.1| Similar to hypothetical
protein F09E5.8 gb|U37429 from C. elegans. ESTs
gb|T42019 and gb|N97000 come from this gene.
[Arabidopsis thaliana]
Length = 255
Score = 149 bits (375), Expect = 2e-35
Identities = 71/91 (78%), Positives = 80/91 (87%)
Frame = -3
Query: 498 VELAKHVKDSCPNLVFSGLMTIGMLDYTSTPQNFQALSNCRTEVCKALEMDEEQCELSMG 319
V LAKHVK++C NL FSGLMTIGM DYTSTP+NF+ L+ CR+EVCK L + EEQCELSMG
Sbjct: 165 VGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSEVCKELGIPEEQCELSMG 224
Query: 318 MSGDFELAIEMGSTNVRVGSTIFGPREYAKK 226
MSGDFELAIE+GSTNVR+GSTIFG REY KK
Sbjct: 225 MSGDFELAIELGSTNVRIGSTIFGAREYPKK 255
>ref|NP_563897.1| putative Proline synthetase associated protein; protein id:
At1g11930.1, supported by cDNA: gi_16226281 [Arabidopsis
thaliana] gi|16226282|gb|AAL16123.1|AF428291_1
At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|21436037|gb|AAM51596.1| At1g11930/F12F1_20
[Arabidopsis thaliana]
Length = 257
Score = 144 bits (362), Expect = 7e-34
Identities = 71/93 (76%), Positives = 80/93 (85%), Gaps = 2/93 (2%)
Frame = -3
Query: 498 VELAKHVKDSCPNLVFSGLMTIGMLDYTSTPQNFQALSNCRTEVCKALEMDEEQCELSMG 319
V LAKHVK++C NL FSGLMTIGM DYTSTP+NF+ L+ CR+EVCK L + EEQCELSMG
Sbjct: 165 VGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSEVCKELGIPEEQCELSMG 224
Query: 318 MSGDFELA--IEMGSTNVRVGSTIFGPREYAKK 226
MSGDFELA IE+GSTNVR+GSTIFG REY KK
Sbjct: 225 MSGDFELALQIELGSTNVRIGSTIFGAREYPKK 257
>pir||T04809 hypothetical protein F10M23.200 - Arabidopsis thaliana
gi|4455209|emb|CAB36532.1| putative Proline synthetase
associated protein [Arabidopsis thaliana]
gi|7269539|emb|CAB79541.1| putative Proline synthetase
associated protein [Arabidopsis thaliana]
Length = 262
Score = 135 bits (341), Expect = 2e-31
Identities = 73/109 (66%), Positives = 78/109 (70%), Gaps = 18/109 (16%)
Frame = -3
Query: 498 VELAKHVKDSCPNLVFSGLMTIGMLDYTSTPQNFQALSNC------------------RT 373
VELA+HVK CPNLVFSGLMTIGM DYTSTP+NF+ R
Sbjct: 152 VELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRVFYYLIGYLFYVFSGYSYKFYLPRA 211
Query: 372 EVCKALEMDEEQCELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYAKK 226
+VCKAL M E+Q ELSMGMSGDFELAIEMGSTNVRVGSTIFGPREY KK
Sbjct: 212 DVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYPKK 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,642,730
Number of Sequences: 1393205
Number of extensions: 8332407
Number of successful extensions: 30099
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 29589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30082
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
