Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005742A_C02 KMC005742A_c02
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD56504.1| steroid 5-alpha reductase [Cicer arietinum] 256 3e-67
dbj|BAB03604.1| putative glycoprotein [Oryza sativa (japonica cu... 243 2e-63
ref|NP_191096.1| synaptic glycoprotein SC2-like protein; protein... 241 5e-63
ref|NP_647836.2| CG10849-PA [Drosophila melanogaster] gi|7292402... 84 2e-15
gb|AAL29169.2| SD09294p [Drosophila melanogaster] 84 2e-15
>emb|CAD56504.1| steroid 5-alpha reductase [Cicer arietinum]
Length = 309
Score = 256 bits (653), Expect = 3e-67
Identities = 117/126 (92%), Positives = 123/126 (96%)
Frame = -1
Query: 666 HPLYTPVSDLQIKIGFGFGILCQVANFYCHIILRSLRGPGGEGGYQIPRGFLFNIVTCAN 487
HP+ PVSDLQ+KIGFGFGILCQV+NFYCHIILR+LRGP GEGGYQIPRGFLFNIVTCAN
Sbjct: 184 HPIIYPVSDLQMKIGFGFGILCQVSNFYCHIILRNLRGPAGEGGYQIPRGFLFNIVTCAN 243
Query: 486 YTTEIYQWLGFNIATQTVAGYIFLAVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWV 307
YTTEIYQWLGFNIATQT+AGY+FLAVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWV
Sbjct: 244 YTTEIYQWLGFNIATQTIAGYLFLAVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWV 303
Query: 306 ILPPFL 289
ILPPFL
Sbjct: 304 ILPPFL 309
>dbj|BAB03604.1| putative glycoprotein [Oryza sativa (japonica cultivar-group)]
gi|13872906|dbj|BAB44013.1| putative glycoprotein [Oryza
sativa (japonica cultivar-group)]
Length = 313
Score = 243 bits (620), Expect = 2e-63
Identities = 113/129 (87%), Positives = 119/129 (91%), Gaps = 3/129 (2%)
Frame = -1
Query: 666 HPLYTPVSDLQIKIGFGFGILCQVANFYCHIILRSLRGPGGEGGYQIPRGFLFNIVTCAN 487
HPLYTPVS+LQ+KIGFGFGILCQ+ANFYCHI+LR+LR P G GGYQIPRGFLFNIVTCAN
Sbjct: 185 HPLYTPVSELQMKIGFGFGILCQIANFYCHILLRNLRSPSGNGGYQIPRGFLFNIVTCAN 244
Query: 486 YTTEIYQWLGFNIATQTVAGYIFLAVATFIMTNWALAKHRRLKK---LFDGKEGRPRYPR 316
YTTEIYQWLGFNIATQTVAGYIFL VA IMTNWAL KHRRLKK LFDGKEGRP+YPR
Sbjct: 245 YTTEIYQWLGFNIATQTVAGYIFLVVAASIMTNWALGKHRRLKKASTLFDGKEGRPKYPR 304
Query: 315 RWVILPPFL 289
RWVILPPFL
Sbjct: 305 RWVILPPFL 313
>ref|NP_191096.1| synaptic glycoprotein SC2-like protein; protein id: At3g55360.1,
supported by cDNA: 6774., supported by cDNA:
gi_17473724, supported by cDNA: gi_20148508 [Arabidopsis
thaliana] gi|11281609|pir||T47675 glycoprotein-like -
Arabidopsis thaliana gi|7076779|emb|CAB75894.1|
glycoprotein-like [Arabidopsis thaliana]
gi|17473725|gb|AAL38312.1| glycoprotein-like
[Arabidopsis thaliana] gi|20148509|gb|AAM10145.1|
glycoprotein-like [Arabidopsis thaliana]
gi|21594270|gb|AAM65988.1| synaptic glycoprotein
SC2-like protein [Arabidopsis thaliana]
Length = 310
Score = 241 bits (616), Expect = 5e-63
Identities = 106/126 (84%), Positives = 119/126 (94%)
Frame = -1
Query: 666 HPLYTPVSDLQIKIGFGFGILCQVANFYCHIILRSLRGPGGEGGYQIPRGFLFNIVTCAN 487
HPLYTPVSDLQ+KIGFGFG++CQVANFYCHI+L++LR P G GGYQIPRGFLFNIVTCAN
Sbjct: 185 HPLYTPVSDLQMKIGFGFGLVCQVANFYCHILLKNLRDPSGAGGYQIPRGFLFNIVTCAN 244
Query: 486 YTTEIYQWLGFNIATQTVAGYIFLAVATFIMTNWALAKHRRLKKLFDGKEGRPRYPRRWV 307
YTTEIYQWLGFNIATQT+AGY+FLAVA IMTNWAL KH RL+K+FDGK+G+P+YPRRWV
Sbjct: 245 YTTEIYQWLGFNIATQTIAGYVFLAVAALIMTNWALGKHSRLRKIFDGKDGKPKYPRRWV 304
Query: 306 ILPPFL 289
ILPPFL
Sbjct: 305 ILPPFL 310
>ref|NP_647836.2| CG10849-PA [Drosophila melanogaster] gi|7292402|gb|AAF47807.1|
CG10849-PA [Drosophila melanogaster]
Length = 302
Score = 84.0 bits (206), Expect = 2e-15
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Frame = -1
Query: 666 HPLYTPVSDLQIKIGFGFGILCQVANFYCHIILRSLRGPG--------GEGGYQIPRGFL 511
HP +T + G LC++ NF HI LR+LR PG +G P L
Sbjct: 177 HPQFTSPCMCTVWGALGAFALCELGNFSVHIALRNLRPPGTKVRKIPVADGN---PLTKL 233
Query: 510 FNIVTCANYTTEIYQWLGFNIATQTVAGYIFLAVATFIMTNWALAKHRRLKKLFDGKEGR 331
F++V+C NYT EI W+ F++ T +A Y+F F MT WALAKHR KK F
Sbjct: 234 FDLVSCPNYTYEIGAWVSFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKD---- 289
Query: 330 PRYPRRWVILPPFL 289
YPR+ + PF+
Sbjct: 290 --YPRQRRSIFPFV 301
>gb|AAL29169.2| SD09294p [Drosophila melanogaster]
Length = 306
Score = 84.0 bits (206), Expect = 2e-15
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Frame = -1
Query: 666 HPLYTPVSDLQIKIGFGFGILCQVANFYCHIILRSLRGPG--------GEGGYQIPRGFL 511
HP +T + G LC++ NF HI LR+LR PG +G P L
Sbjct: 181 HPQFTSPCMCTVWGALGAFALCELGNFSVHIALRNLRPPGTKVRKIPVADGN---PLTKL 237
Query: 510 FNIVTCANYTTEIYQWLGFNIATQTVAGYIFLAVATFIMTNWALAKHRRLKKLFDGKEGR 331
F++V+C NYT EI W+ F++ T +A Y+F F MT WALAKHR KK F
Sbjct: 238 FDLVSCPNYTYEIGAWVSFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKD---- 293
Query: 330 PRYPRRWVILPPFL 289
YPR+ + PF+
Sbjct: 294 --YPRQRRSIFPFV 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,707,593
Number of Sequences: 1393205
Number of extensions: 12698175
Number of successful extensions: 33377
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 30551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33125
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
