Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005739A_C01 KMC005739A_c01
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T46087 hypothetical protein T20E23.160 - Arabidopsis thalia... 89 3e-17
gb|AAM64907.1| unknown [Arabidopsis thaliana] 90 4e-17
ref|NP_566935.1| putative protein; protein id: At3g50560.1, supp... 89 5e-17
ref|ZP_00028003.1| hypothetical protein [Burkholderia fungorum] 76 6e-13
ref|ZP_00033958.1| hypothetical protein [Burkholderia fungorum] 71 1e-11
>pir||T46087 hypothetical protein T20E23.160 - Arabidopsis thaliana
gi|6561996|emb|CAB62485.1| putative protein [Arabidopsis
thaliana]
Length = 267
Score = 88.6 bits (218), Expect(2) = 3e-17
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 18/97 (18%)
Frame = -3
Query: 393 ALSQSRAREFQPQGVHVAQVIIDGVIGPPKETSTT------------------ASSSQRG 268
ALSQ A+E+Q G+HVA VIIDGV+GPP+ET+ G
Sbjct: 171 ALSQCLAKEYQAFGIHVAHVIIDGVVGPPRETNIPPRGMVAEQSFNVGGEDGEGEGESSG 230
Query: 267 SVNMDPDAVAQSYWQLHVQDKNAWTQEMDLRSSSSVF 157
+ MDPD +AQ+YW LHVQD+ AWT E+D+R S+ F
Sbjct: 231 VMGMDPDVLAQTYWYLHVQDRRAWTHELDIRPSNPNF 267
Score = 21.9 bits (45), Expect(2) = 3e-17
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 418 GCGKFALR 395
GCGKFALR
Sbjct: 163 GCGKFALR 170
>gb|AAM64907.1| unknown [Arabidopsis thaliana]
Length = 272
Score = 89.7 bits (221), Expect = 4e-17
Identities = 54/135 (40%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Frame = -3
Query: 507 PGKVKKKKDKIFFIL*SASF*RHC*KLYNLAVENSH*GALSQSRAREFQPQGVHVAQVII 328
PG ++K K I F SAS L ALSQ A+E+Q G+HVA VII
Sbjct: 139 PGMMEKGKGTILFTGCSASL-NGIASFSELCCGKFALRALSQCLAKEYQAFGIHVAHVII 197
Query: 327 DGVIGPPKETSTT------------------ASSSQRGSVNMDPDAVAQSYWQLHVQDKN 202
DGV+GPP+ET+ G + MDPD +AQ+YW LHVQD+
Sbjct: 198 DGVVGPPRETNIPPRGMVAEQSFNVGGEDGEGEGESSGVMGMDPDVLAQTYWYLHVQDRR 257
Query: 201 AWTQEMDLRSSSSVF 157
AWT E+D+R S+ F
Sbjct: 258 AWTHELDIRPSNPNF 272
>ref|NP_566935.1| putative protein; protein id: At3g50560.1, supported by cDNA:
34560., supported by cDNA: gi_16612319 [Arabidopsis
thaliana] gi|16612320|gb|AAL27518.1|AF439850_1
AT3g50560/T20E23_160 [Arabidopsis thaliana]
gi|21928097|gb|AAM78077.1| AT3g50560/T20E23_160
[Arabidopsis thaliana]
Length = 272
Score = 89.4 bits (220), Expect = 5e-17
Identities = 56/141 (39%), Positives = 72/141 (50%), Gaps = 24/141 (17%)
Frame = -3
Query: 507 PGKVKKKKDKIFFIL*SAS------F*RHC*KLYNLAVENSH*GALSQSRAREFQPQGVH 346
PG ++K K I F SAS F C + L ALSQ A+E+Q G+H
Sbjct: 139 PGMMEKGKGTILFTGCSASLNGIAGFSELCCGKFALR-------ALSQCLAKEYQAFGIH 191
Query: 345 VAQVIIDGVIGPPKETSTT------------------ASSSQRGSVNMDPDAVAQSYWQL 220
VA VIIDGV+GPP+ET+ G + MDPD +AQ+YW L
Sbjct: 192 VAHVIIDGVVGPPRETNIPPRGMVAEQSFNVGGEDGEGEGESSGVMGMDPDVLAQTYWYL 251
Query: 219 HVQDKNAWTQEMDLRSSSSVF 157
HVQD+ AWT E+D+R S+ F
Sbjct: 252 HVQDRRAWTHELDIRPSNPNF 272
>ref|ZP_00028003.1| hypothetical protein [Burkholderia fungorum]
Length = 386
Score = 75.9 bits (185), Expect = 6e-13
Identities = 38/81 (46%), Positives = 55/81 (66%), Gaps = 2/81 (2%)
Frame = -3
Query: 393 ALSQSRAREFQPQGVHVAQVIIDGVI-GPPKETSTTASSSQRGSVNM-DPDAVAQSYWQL 220
+L+QS AREF PQ +HVA V++DG I G TS +++RG + +PD +A SYW+L
Sbjct: 306 SLTQSLAREFGPQNIHVAHVVVDGGIDGERLRTSAPQRAAERGPDGLLNPDEIADSYWRL 365
Query: 219 HVQDKNAWTQEMDLRSSSSVF 157
H Q ++AW+QE+DLR + F
Sbjct: 366 HQQGRSAWSQEIDLRPFNESF 386
>ref|ZP_00033958.1| hypothetical protein [Burkholderia fungorum]
Length = 261
Score = 71.2 bits (173), Expect = 1e-11
Identities = 38/81 (46%), Positives = 52/81 (63%), Gaps = 2/81 (2%)
Frame = -3
Query: 393 ALSQSRAREFQPQGVHVAQVIIDGVI-GPPKETSTTASSSQRGSVNM-DPDAVAQSYWQL 220
+L+QS AREF P+ +HVA V+IDG I G TS S+RG + DP +A +YW L
Sbjct: 181 SLAQSLAREFGPRNIHVAHVVIDGGIDGERLRTSAPQRVSERGPDGLLDPADIADAYWYL 240
Query: 219 HVQDKNAWTQEMDLRSSSSVF 157
H Q ++AW+QE+DLR + F
Sbjct: 241 HRQSRSAWSQEIDLRPFNESF 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,012,635
Number of Sequences: 1393205
Number of extensions: 14972270
Number of successful extensions: 35828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35790
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
