Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005738A_C01 KMC005738A_c01
(918 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum] 383 e-105
ref|NP_197572.1| chloroplast Cpn21 protein; protein id: At5g2072... 365 e-100
gb|AAF60293.1| chaperonin 21 precursor [Lycopersicon esculentum] 362 4e-99
pir||T52122 chaperonin 10 [imported] - Arabidopsis thaliana gi|3... 355 7e-97
sp|Q02073|CH1C_SPIOL 20 kDa chaperonin, chloroplast precursor (P... 316 3e-85
>gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum]
Length = 256
Score = 383 bits (984), Expect = e-105
Identities = 197/256 (76%), Positives = 223/256 (86%), Gaps = 2/256 (0%)
Frame = -1
Query: 906 MATSQFTASSI--SARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 733
MATSQ TASS+ SARNL SL+GLR S ++F G ++ T + F LVVKAATVVAP
Sbjct: 1 MATSQLTASSVTASARNLASLQGLRLSTVKFSSFGTLKPGAVTSRSFRGLVVKAATVVAP 60
Query: 732 KHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISV 553
K+T++KPLGDRVLVKIKE EEKT GGILLP+TAQSKPQGGEVVAVGEGK+IGN K + SV
Sbjct: 61 KYTSVKPLGDRVLVKIKETEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKSESSV 120
Query: 552 KTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEK 373
KTGA+V+YSKYAGTEVEFNG+ HL+LK+DDIVG+LETD+++DLKPLNDRV IKV+ AEEK
Sbjct: 121 KTGAQVIYSKYAGTEVEFNGANHLLLKEDDIVGLLETDDIKDLKPLNDRVFIKVSEAEEK 180
Query: 372 TAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDG 193
TAGGLLLTEA+KEKPSIGTVIA GPGTLDEEGN KPLSV+PG+TVLYSKYAGNDFKG DG
Sbjct: 181 TAGGLLLTEASKEKPSIGTVIAVGPGTLDEEGNLKPLSVSPGNTVLYSKYAGNDFKGNDG 240
Query: 192 SEYIVLRVSDVMATLS 145
S YI LR SDVMA LS
Sbjct: 241 SNYIALRASDVMAVLS 256
>ref|NP_197572.1| chloroplast Cpn21 protein; protein id: At5g20720.1, supported by
cDNA: gi_10179871, supported by cDNA: gi_14334611,
supported by cDNA: gi_14587372, supported by cDNA:
gi_16226814, supported by cDNA: gi_16226910, supported
by cDNA: gi_17065645, supported by cDNA: gi_3057149
[Arabidopsis thaliana] gi|12643263|sp|O65282|CH1C_ARATH
20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) (Chaperonin 20) gi|25453529|pir||T52613
chaperonin 21 precursor, chloroplast [imported] -
Arabidopsis thaliana gi|4127456|emb|CAA09368.1| Cpn21
protein [Arabidopsis thaliana]
gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10
[Arabidopsis thaliana] gi|14334612|gb|AAK59484.1|
putative chloroplast Cpn21 protein [Arabidopsis
thaliana] gi|14587373|dbj|BAB61619.1| chaperonin 20
[Arabidopsis thaliana]
gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120
[Arabidopsis thaliana]
gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120
[Arabidopsis thaliana] gi|17065646|gb|AAL33817.1|
putative chloroplast Cpn21 protein [Arabidopsis
thaliana]
Length = 253
Score = 365 bits (937), Expect = e-100
Identities = 192/256 (75%), Positives = 219/256 (85%), Gaps = 2/256 (0%)
Frame = -1
Query: 906 MATSQFTASSI--SARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 733
MA +Q TAS + SAR+L SL+GLR S+++F ++ T Q F LVVKAA+VVAP
Sbjct: 1 MAATQLTASPVTMSARSLASLDGLRASSVKF---SSLKPGTLRQSQFRRLVVKAASVVAP 57
Query: 732 KHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISV 553
K+T+IKPLGDRVLVKIKEAEEKT+GGILLPSTAQSKPQGGEVVAVGEG++IG NK+DI+V
Sbjct: 58 KYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITV 117
Query: 552 KTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEK 373
TGA+++YSKYAGTEVEFN KHLILK+DDIVGILET++++DLKPLNDRV IKVA AEEK
Sbjct: 118 PTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEK 177
Query: 372 TAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDG 193
TAGGLLLTE TKEKPSIGTVIA GPG+LDEEG PL V+ GSTVLYSKYAGNDFKGKDG
Sbjct: 178 TAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDG 237
Query: 192 SEYIVLRVSDVMATLS 145
S YI LR SDVMA LS
Sbjct: 238 SNYIALRASDVMAILS 253
>gb|AAF60293.1| chaperonin 21 precursor [Lycopersicon esculentum]
Length = 253
Score = 362 bits (929), Expect = 4e-99
Identities = 190/254 (74%), Positives = 212/254 (82%)
Frame = -1
Query: 906 MATSQFTASSISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAPKH 727
MA++Q TASSIS S EGLR + + V + + F LVVKAAT VAPK+
Sbjct: 1 MASTQLTASSISGNGFASFEGLRSTCI-VKTVSFAPLKHNNSRSFSRLVVKAATTVAPKY 59
Query: 726 TAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISVKT 547
T +KPLGDRVLVKIK AEEKTVGGILLP + QSKP GGEVVAVGEG S G KVDISVKT
Sbjct: 60 TTLKPLGDRVLVKIKTAEEKTVGGILLPVSVQSKPNGGEVVAVGEGHSAGKTKVDISVKT 119
Query: 546 GAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEKTA 367
GA+V+YSKYAGTEVEF+GSKHLILK+DDIVGILETD+V+DL+PLNDRVLIKVA AEEKTA
Sbjct: 120 GAQVIYSKYAGTEVEFDGSKHLILKEDDIVGILETDDVKDLQPLNDRVLIKVAEAEEKTA 179
Query: 366 GGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDGSE 187
GGLLLTEA KEKPSIGT+IA GPG LDEEGNRKPLSV+PG+TVLYSKYAG++FKG DGS+
Sbjct: 180 GGLLLTEAAKEKPSIGTIIAVGPGPLDEEGNRKPLSVSPGNTVLYSKYAGSEFKGADGSD 239
Query: 186 YIVLRVSDVMATLS 145
YI LRVSDVMA LS
Sbjct: 240 YITLRVSDVMAVLS 253
>pir||T52122 chaperonin 10 [imported] - Arabidopsis thaliana
gi|3057150|gb|AAC14026.1| chaperonin 10 [Arabidopsis
thaliana]
Length = 254
Score = 355 bits (910), Expect = 7e-97
Identities = 190/257 (73%), Positives = 217/257 (83%), Gaps = 3/257 (1%)
Frame = -1
Query: 906 MATSQFTASSI--SARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 733
MA +Q TAS + SAR+L SL+GLR S+++ V ++ T Q F LVVKAA+VVAP
Sbjct: 1 MAATQLTASPVTMSARSLASLDGLRASSVK---VSSLKPGTLRQSQFRRLVVKAASVVAP 57
Query: 732 KHTAIKPLGDRVLVKIKEAEEKTVGGIL-LPSTAQSKPQGGEVVAVGEGKSIGNNKVDIS 556
K+T+IKPLGDRVLVKIKEAEEKT+GGIL STAQSKPQGGEVVAVGEG++IG NK+DI+
Sbjct: 58 KYTSIKPLGDRVLVKIKEAEEKTLGGILTFHSTAQSKPQGGEVVAVGEGRTIGKNKIDIT 117
Query: 555 VKTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEE 376
V TGA+++YSKYAGTEVEFN KHLILK+DDIVGILET++++DLKPLNDRV IKVA AEE
Sbjct: 118 VPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 177
Query: 375 KTAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKD 196
KTAGGLLLTE TKEKPSIGTVIA GPG+LDEEG PL V+ GSTVLYSKYAGNDFKGKD
Sbjct: 178 KTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKD 237
Query: 195 GSEYIVLRVSDVMATLS 145
GS YI LR SDVMA LS
Sbjct: 238 GSNYIALRASDVMAILS 254
>sp|Q02073|CH1C_SPIOL 20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) gi|421794|pir||A46176 chaperonin 10 - spinach
gi|170107|gb|AAB59307.1| chaperonin 10
Length = 255
Score = 316 bits (810), Expect = 3e-85
Identities = 163/255 (63%), Positives = 199/255 (77%), Gaps = 2/255 (0%)
Frame = -1
Query: 903 ATSQFTASSISARNLPSLEGLRPSALQFHHVGRVRIATP--TQKWFPSLVVKAATVVAPK 730
AT + SS++ LPS EGLR SA + V +A P T + F LVV+AA++ K
Sbjct: 3 ATHLTSTSSLTINTLPSFEGLR-SASGISKIN-VSVAYPSFTSRSFRGLVVRAASITTSK 60
Query: 729 HTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISVK 550
+T++KPLGDRVL+K K EEKT GI LP+ AQ KPQ GEVVA+G GK +G+ K+ ++VK
Sbjct: 61 YTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVK 120
Query: 549 TGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEKT 370
TGA+VVYSKY GTE+E +GS HLI+K+DDI+GILETD+V+DLKPLNDR+LIKVA E KT
Sbjct: 121 TGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKT 180
Query: 369 AGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDGS 190
+GGLLL E++KEKPS GTV+A GPG LDEEGNR PL V G+TVLYSKYAGNDFKG DGS
Sbjct: 181 SGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGS 240
Query: 189 EYIVLRVSDVMATLS 145
+Y+VLRVSDVMA LS
Sbjct: 241 DYMVLRVSDVMAVLS 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 833,488,786
Number of Sequences: 1393205
Number of extensions: 19888691
Number of successful extensions: 60280
Number of sequences better than 10.0: 394
Number of HSP's better than 10.0 without gapping: 55769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59760
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50473155824
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
